Locus 54

Sequence ID 2R_DroMel_CAF1
Location 1,308,951 – 1,309,070
Length 119
Max. P 0.666102
window104

overview

Window 4

Location 1,308,951 – 1,309,070
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.17
Mean single sequence MFE -27.50
Consensus MFE -23.90
Energy contribution -24.65
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.87
SVM decision value 0.28
SVM RNA-class probability 0.666102
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1308951 119 - 20766785
CCUGAUUUUCCAAUUAUCCAAGCCGAACAACUGCAGCUCAUUGACACAACCGGCAGAGCCAUGGAAACCGUUGAUCAAUGAAAUCGCUUGGAAGUUGGAGUUACACC-CCCAAACACAUA
.......((((((((.(((((((.(........)...(((((((..((((.(((...)))..(....).)))).)))))))....))))))))))))))).......-............ ( -30.90)
>DroSec_CAF1 27370 119 - 1
CCUGAUUUUGCAAUUAUCCAAGCCGAACAACUGCAGCUCAUUGACACAACCGGCAGAACCAUGGAAGCCGUUGAUCAAUGAAAUCGCUUGGAAGUUGGAGUUACACC-CCAACACACAUG
................(((((((.(........)...(((((((..((((.(((............))))))).)))))))....))))))).(((((.(.....).-)))))....... ( -29.20)
>DroSim_CAF1 6370 120 - 1
CCUGAUUUUCCAAUUAUCCCAGCCGAACAACUGCAGCUCAUUGACACAACCGGCAGAACCAUGGAAACCGUUGAUCAAUGAAAUCGCUUGGAAGUUGGAGUUACACCCCCAACACACAUG
.......((((((((.(((.(((.(........)...(((((((..((((.((.....))..(....).)))).)))))))....))).))))))))))).................... ( -24.60)
>DroEre_CAF1 10169 116 - 1
CCUGAAUUUCCAAUUAUCCAAGCCAAACAACUACAGCUCAUUGACACAACCGGCAGAACCAUGGCAACCGUUGAUCAAUGAAAUCGCUUGGAAGUUGGUGUUACACC-CCCAAACAC---
..(((((..((((((.(((((((.......(....).(((((((..((((.((.....))..(....).)))).)))))))....))))))))))))).))).))..-.........--- ( -25.30)
>consensus
CCUGAUUUUCCAAUUAUCCAAGCCGAACAACUGCAGCUCAUUGACACAACCGGCAGAACCAUGGAAACCGUUGAUCAAUGAAAUCGCUUGGAAGUUGGAGUUACACC_CCAAAACACAUG
.......((((((((.(((((((.......(....).(((((((..((((.((.....))..(....).)))).)))))))....))))))))))))))).................... (-23.90 = -24.65 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:58 2006