| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,432,782 – 17,432,879 |
| Length | 97 |
| Max. P | 0.576888 |
| Location | 17,432,782 – 17,432,879 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.47 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -17.11 |
| Energy contribution | -16.95 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17432782 97 - 20766785 UUUUGCAGAGCGUUUCGCCAAGUGGCC----GGAGAAGUAAGAGAAAUAAUGCGACAAUUGCAUUAAGUCUACCA---GCGCUGAAUGCUGACAAAAAAAAAUA (((((((((((((((((((....)).)----)))........(((..((((((((...))))))))..)))....---))))).....))).)))))....... ( -23.80) >DroSec_CAF1 148650 93 - 1 UUUUGCAGAGCGUUUCGCCAAGUGGCC----GGAGAAGUAAGAGAAAUAAUGCGACAAUUGCAUUAAGUCUACCA---GCGCUGAAUGCUGACAAAAA----UA (((((((((((((((((((....)).)----)))........(((..((((((((...))))))))..)))....---))))).....))).))))).----.. ( -23.80) >DroSim_CAF1 152589 93 - 1 UUUUGCAGAGCGUUUCGCCAAGUGGCC----GGAGAAGUAAGAGAAAUAAUGCGACAAUUGCAUUAAGUCUACCA---GCGCUGAAUGCUGACAAAAA----AA (((((((((((((((((((....)).)----)))........(((..((((((((...))))))))..)))....---))))).....))).))))).----.. ( -23.80) >DroEre_CAF1 148523 95 - 1 UUUCGCAGAGUGUUUCGCCAAGUGGCCAAGUGGAGAAGUAAGAGAAAUAAUGCGACAAUUGCAUUAAGGCUACCA---GCGCUGAAUGCUGACAAAAA------ ..(((((...(((((((((....)))(....)...........)))))).))))).....(((((.((((.....---)).)).))))).........------ ( -22.40) >DroYak_CAF1 132564 100 - 1 UUUUGUAGAGUGUUUCGCCAAGUGGCCAAGUGGAGAAGUAAGAGAAAUAAUGCGACAAUUGCAUUAAGUCUACCAGCAGCGCUGAAUGCUGACAAAAA----AA ((((((..(((((((.(((....)))..((((..(.......(((..((((((((...))))))))..))).....)..))))))))))).)))))).----.. ( -23.70) >DroPer_CAF1 162503 82 - 1 UUUCGUGGAGUGUUUCGCC------------GUAGAAGUAAAGGAAAUAAUGCGACAAUUGCAUUAAGUCCACAA---AUGUCGGA-GCACACGAGAG------ ((((((...((((((((.(------------((....((...(((..((((((((...))))))))..)))))..---))).))))-)))))))))).------ ( -24.80) >consensus UUUUGCAGAGCGUUUCGCCAAGUGGCC____GGAGAAGUAAGAGAAAUAAUGCGACAAUUGCAUUAAGUCUACCA___GCGCUGAAUGCUGACAAAAA_____A ....(((.(((((...(((....)))................(((..((((((((...))))))))..))).......)))))...)))............... (-17.11 = -16.95 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:49 2006