Locus 538

Sequence ID 2R_DroMel_CAF1
Location 2,837,237 – 2,837,336
Length 99
Max. P 0.894495
window1006

overview

Window 6

Location 2,837,237 – 2,837,336
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.08
Mean single sequence MFE -24.80
Consensus MFE -19.17
Energy contribution -18.53
Covariance contribution -0.64
Combinations/Pair 1.35
Mean z-score -2.12
Structure conservation index 0.77
SVM decision value 0.98
SVM RNA-class probability 0.894495
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2837237 99 - 20766785
AGCACCCAAUAACUUCUGAAGAAUAGAUCAGUUUGCAGACCGAGUUGUAAACUUAUUUAUCAACAGUUGUUAUUGGCCCUGUGGAGGACUGUACUUAAA
.(((.((((((((..(((..((.(((((.(((((((((......))))))))).)))))))..)))..)))))))).(((....)))..)))....... ( -27.60)
>DroSec_CAF1 4725 99 - 1
AGCACCCAAUAACUUCUGAGGAAUAGAUCAGUUUGCAGACCGAGUUGUAAACUUAUUUAUCAGCCGUUGUUAUUGGCUCUGUGGAGGACUGUACUUAUA
.(((.((((((((......((.((((((.(((((((((......))))))))).))))))...))...))))))))(((....)))...)))....... ( -25.10)
>DroSim_CAF1 2847 99 - 1
AGCACCCAAUAACUUCUGAAGAAUAGAUCAGUUUGCAGACCGAGUUGUAAACUUAUUUAUCAGCUGUUGUUAUUGGCUCUGUGGAGGACUGUACUUAUA
.(((.((((((((..((((.(((((....(((((((((......)))))))))))))).)))).....))))))))(((....)))...)))....... ( -24.40)
>DroEre_CAF1 3469 99 - 1
AACACCCAAUAACUUCUGAAGAAUGGAUCAGUUUACAGACCGAACUGUAAAUUUAUUUAUGAGCAGUUGUUAUUGGCUCUGUGGAGGACUCUACUUAUA
.....((((((((..(((....((((((.(((((((((......))))))))).))))))...)))..))))))))....(((((....)))))..... ( -29.90)
>DroYak_CAF1 2840 99 - 1
AGCACCCGAUAACUUCUGAGGAAUAGAUCAGUUUGCAGACCAAGUUGCAAAUUUAUUUAUGAGCAGUUGUUAUUGGAUCUGUGGAGGACUCUAUUUAUA
.....((((((((..(((....((((((.(((((((((......))))))))).))))))...)))..))))))))((..(((((....)))))..)). ( -28.50)
>DroAna_CAF1 3651 84 - 1
-------AGUAACAUCAUU-AAAUGGAUUAAUUUGCAAAUC-AGUUGCAAACCUAUUUAUAUGCAUUCGUUAUUAGCCUAAUGGAGUA------UUAUA
-------...........(-((((((.....(((((((...-..))))))).))))))).((((.(((((((......))))))))))------).... ( -13.30)
>consensus
AGCACCCAAUAACUUCUGAAGAAUAGAUCAGUUUGCAGACCGAGUUGUAAACUUAUUUAUCAGCAGUUGUUAUUGGCUCUGUGGAGGACUGUACUUAUA
.....((((((((.........((((((.(((((((((......))))))))).))))))........))))))))....................... (-19.17 = -18.53 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:13 2006