| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,343,074 – 17,343,189 |
| Length | 115 |
| Max. P | 0.982224 |
| Location | 17,343,074 – 17,343,189 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.43 |
| Mean single sequence MFE | -36.19 |
| Consensus MFE | -18.43 |
| Energy contribution | -20.35 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17343074 115 + 20766785 -AAUUUAAUUCAGCAAUUUAAGCGAGAGCAGGGCAAAGAAAGCCAACCCGUAGCUCAAGAGUUUUUUACUUUGCUCAGCUGAGGACUUGGGUCCCAAUUCCAAAUCGUAGUUGUUG -.........((((((((...((((.(((.((((((((...((......))((((....)))).....)))))))).)))..(((.((((...)))).)))...)))))))))))) ( -30.00) >DroPse_CAF1 67226 113 + 1 AAUACUAGUUGAACAAAAGAAGGGCCAGCAGGCCUAUGAGGGCCAAGCUCAGGCCUGCUACCCUUUGACCCAGACCUGCACUCGACUUGG---CGUAGGCCAAGUCGAACGUGUUG .......(((........((((((..(((((((((....((((...))))))))))))).))))))......)))..(((((((((((((---(....))))))))))..)))).. ( -49.34) >DroSec_CAF1 59086 116 + 1 AAAUUUAAUUCAGCAAUUUAAGCGAGAGCAGGGCAAAGAAAGCCAAGCCGAAACUCAUGAGUUUUUUACUCUGGUCGGCUGAGGAUUUGGGUGCCAAUUCCAAAUCGAAGUUGUUG ..........(((((((((..((....))..(((.......))).((((((...(((.((((.....)))))))))))))...((((((((.......)))))))).))))))))) ( -37.10) >DroSim_CAF1 61491 116 + 1 AAAUUUAAUUCAGCAAUUUAAGCGAGAGCAGGGCAAAGAAAGCCAAGCCGAAGCUCAUGAGUUUUUUACUCCGGUCGGCUGAGGAUUUUGGUCCCAAUUCCAAAUCGAAGUUGUUG ..........(((((((((..((....)).((((...((((.((.((((((.......((((.....))))...))))))..)).)))).)))).............))))))))) ( -33.10) >DroEre_CAF1 57693 115 + 1 -AAUUUAAUUCAGCAAUUUAAGCGAGAGCAAGGCAAAGAAAGCCAAGCCGAAGCUCAUGAGUUUUCUACUUUGCUCAGCUGCCGACUUCAAUCCCAAUUCCAAGUCGAAAUUGUUG -.........(((((((((.(((..((((((((...((((((((((((....)))..)).))))))).)))))))).)))..((((((.............))))))))))))))) ( -35.22) >DroYak_CAF1 38877 115 + 1 -AAUUUAAUUCAGCAAUUUAAGCGAGAGCAAGGCAAACAAAGCCAAGACGAAGCUCAUGAGUUUUCUACUUUGCUCAGCUGCAGACUUGGAACCCAAUUGUAAGUCGAAAUUGUUG -.........(((((((((.(((..(((((((((.......))).....((((((....)))))).....)))))).)))...((((((.((.....)).)))))).))))))))) ( -32.40) >consensus _AAUUUAAUUCAGCAAUUUAAGCGAGAGCAGGGCAAAGAAAGCCAAGCCGAAGCUCAUGAGUUUUUUACUCUGCUCAGCUGAGGACUUGGGUCCCAAUUCCAAAUCGAAGUUGUUG ..........(((((((((.(((..((.((((((.......))).....((((((....)))))).....))).)).)))...((((((((.......)))))))).))))))))) (-18.43 = -20.35 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:12 2006