Locus 5367

Sequence ID 2R_DroMel_CAF1
Location 17,337,504 – 17,337,610
Length 106
Max. P 0.723550
window8572

overview

Window 2

Location 17,337,504 – 17,337,610
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.90
Mean single sequence MFE -26.57
Consensus MFE -20.82
Energy contribution -21.52
Covariance contribution 0.70
Combinations/Pair 1.16
Mean z-score -1.61
Structure conservation index 0.78
SVM decision value 0.41
SVM RNA-class probability 0.723550
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17337504 106 - 20766785
AUAUUUAUACAAUCAUCUAUCAUUGGCAGAUGCUUUAACCCAUAACUGGCAUUCGGGUCCCAUCAAUUGCUACGAGUGUUCCACACUCGAUGAGUGCUCUGCAGGA
.........((((........))))(((((.((....((((.............))))..........(((.((((((.....))))))...)))))))))).... ( -24.02)
>DroSec_CAF1 53301 94 - 1
AUA------------UCUCUUAUUUGCAGAUGCUUAUACCCACAACUGGCAUUCGGGCCCCAUCAAUUGCUACGAGUGUUCCACACUCGAUGAGUGCGCUGCAGGA
...------------.......(((((((..((((((.........(((((...((......))...)))))((((((.....))))))))))))...))))))). ( -26.30)
>DroSim_CAF1 54975 94 - 1
AUA------------UCUAUUAUUUGCAGAUGCUUAUACCCACAACUGGCAUUCGGGCCCCAUCAAUUGCUACGAGUGUUCCACACUCGAUGAGUGCUCUGCAGGA
...------------.......(((((((((((((((.........(((((...((......))...)))))((((((.....))))))))))))).)))))))). ( -27.90)
>DroEre_CAF1 49964 91 - 1
GCA------------UCUAUUAUUUGCAGAUGCUCU---GCACAACUGGCAUUCGGGUCCCAUCAAUUGCUAUGAGUGUUCCACACUCGACGAGUGCUCGGCAGGA
(((------------(((.........))))))(((---((......(((((((((....)...........((((((.....)))))).))))))))..))))). ( -29.50)
>DroYak_CAF1 33051 94 - 1
UCA------------UCUAUUACUUGCAGAUGCUUUAAUUCACAACUGGCAUUCCGGUCCCAUCAACUGCUAUGAGUGCUCCACACUCGAUGAGUGCUCUGCAGGA
...------------.......((((((((.((....(((((..(((((....)))))..............((((((.....)))))).))))))))))))))). ( -26.30)
>DroAna_CAF1 41494 94 - 1
GAA------------CCUCUGUUUUGCAGAAGCCUAUGUCCACAACUGGCAUUCGGGACCCAUCAAUUGCCACGAAUGUUCCGGCCUCGAGGAGUGCUCUGCAGGA
...------------......(((((((((.((((..........((((((((((((............)).))))))..))))((....)))).))))))))))) ( -25.40)
>consensus
AUA____________UCUAUUAUUUGCAGAUGCUUAUACCCACAACUGGCAUUCGGGUCCCAUCAAUUGCUACGAGUGUUCCACACUCGAUGAGUGCUCUGCAGGA
......................(((((((((((((...........(((((....(....)......)))))((((((.....))))))..))))).)))))))). (-20.82 = -21.52 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:11 2006