| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,833,399 – 2,833,490 |
| Length | 91 |
| Max. P | 0.988845 |
| Location | 2,833,399 – 2,833,490 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.87 |
| Mean single sequence MFE | -33.46 |
| Consensus MFE | -19.14 |
| Energy contribution | -19.38 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.57 |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.988845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2833399 91 + 20766785 -----------------CUAUCAGUUUGCGCAUUUCUUCGGUGGUGCGCUGAUCUUUCGGUUGUGGAGAUCGCUUCACUGCUGCGAGUUCAGCAUUUGGGGUUCG-GAA -----------------...((.(..(.(((((..(....)..))))(((((.(((.((((.((((((....)))))).)))).))).))))).....).)..).-)). ( -31.80) >DroPse_CAF1 2 97 + 1 ----------UACCUUUCAAUCAGUUUACGCAUCUCUUCGGUGGUGCGCUGAUCUUUCGGUUGGGGGGAUCGCUUCACAGCUGCGAUUUCCGCAUUUUA--UACGAGUA ----------.(((.....(((((....((((((.(....).))))))))))).....)))((.((..(((((.........)))))..)).)).....--........ ( -32.30) >DroSec_CAF1 882 108 + 1 GGUCUGGUCUUACCUUUCUAUCAGUUUGCGCAUUUCUUCGGUGGUGCGCUGAUCUUUCGGCUGUGGAGAUCGCUUCACUGCUGCGAGUUCAGCAUUUGGGGUUCG-GAA ..(((((....(((((.............((((..(....)..))))(((((.(((.((((.((((((....)))))).)))).))).)))))....))))))))-)). ( -39.30) >DroAna_CAF1 4 90 + 1 ------CUCUUACCUCUCAAUCAGUUUACGCAUUUCUUCGGUGGUGCGCUGAUCUUUUGGUUGGGGGGAUCGCUUCACAGCUGCGAUUUUA------------CA-UAU ------......((((((((((((.((((((((..(....)..))))).)))....))))))))))))(((((.........)))))....------------..-... ( -31.40) >DroPer_CAF1 6271 102 + 1 G-----GUCUUACCUUUCAAUCAGUUUACGCAUCUCUUCGGUGGUGCGCUGAUCUUUCGGUUGGGGGGAUCGCUUCACAGCUGCGAUUUCCGCAUUUUA--UACGAGUA (-----(.....)).....(((((....((((((.(....).)))))))))))..((((..((.((..(((((.........)))))..)).)).....--..)))).. ( -32.50) >consensus _______UCUUACCUUUCAAUCAGUUUACGCAUUUCUUCGGUGGUGCGCUGAUCUUUCGGUUGGGGGGAUCGCUUCACAGCUGCGAUUUCAGCAUUUGA__UACG_GAA .............................(((((........)))))(((((..((.((((((.((((....)))).)))))).))..)))))................ (-19.14 = -19.38 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:07 2006