| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,831,687 – 2,831,777 |
| Length | 90 |
| Max. P | 0.999985 |
| Location | 2,831,687 – 2,831,777 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 69.04 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -19.25 |
| Energy contribution | -18.38 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.32 |
| Mean z-score | -3.78 |
| Structure conservation index | 0.79 |
| SVM decision value | 5.38 |
| SVM RNA-class probability | 0.999985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2831687 90 - 20766785 GAUUGUUAAUUUACAGAGCUUUGUGAGUGAGUACUUACGAUUGUGCUCAUUACUCGCUUUGUUCUUUAUUUACAGACAAGUGAUUGUCCU ...(((.(((..(((((((...((((.(((((((........)))))))))))..))))))).....))).)))(((((....))))).. ( -27.50) >DroSec_CAF1 20720 70 - 1 GAUUGUUAAUUUACAGAGCCGUGUGAGUGGGUACCUACAAUUGUGCCCAACACUCGCUCAGUUCUUUAUU-------------------- ..............(((((.(.((((((((((((........))))))...)))))).).))))).....-------------------- ( -21.80) >DroSim_CAF1 36730 70 - 1 GAUUGUUAAUUUACAGAGCCGUGUGAGUGGGUACUUACAAUUGUGCCCAACACUCGCUCAGUUCUUUAUU-------------------- ..............(((((.(.((((((((((((........))))))...)))))).).))))).....-------------------- ( -23.00) >DroEre_CAF1 21558 84 - 1 GAUUGUUUAUUUUUAGAGCUUUGUGAGUCGGUA------AUUGUAUUCCGUGCUCGCUUUGUUCUUAAUUUACAGACAAGUGAUUGUCCU ...(((..(((...(((((...(((((((((..------........))).))))))...))))).)))..)))(((((....))))).. ( -24.90) >consensus GAUUGUUAAUUUACAGAGCCGUGUGAGUGGGUACUUACAAUUGUGCCCAACACUCGCUCAGUUCUUUAUU____________________ ...........((.(((((...((((((((((((........))))))...))))))...))))).))...................... (-19.25 = -18.38 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:06 2006