| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,270,861 – 17,270,962 |
| Length | 101 |
| Max. P | 0.538525 |
| Location | 17,270,861 – 17,270,962 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.21 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -23.22 |
| Energy contribution | -23.55 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17270861 101 - 20766785 UGCGCCUCGCUCAAAGUCAAUAUGCGGGCGCAAAUGUACGAAAUGAUGAGACAGACUUGGCAGUAGGUUGGUAACUGCACUGCUAAA------------------AAUGAUUAGAAAUU- ((((((.(((.............)))))))))...................((...((((((((.(((.....)))..)))))))).------------------..))..........- ( -27.52) >DroSec_CAF1 5886 102 - 1 UGCGCCUCGCUCAAAGUCAAUAUGCGGGCGCAAAUGUACGAAAUGAUGAGACAGACUUGUCAGUAGGUUGGUAACUGCACUGCUAAA------------------AAUUAUUAAGAAUUC ((((((.(((.............)))))))))...........(((((((((......)))(((((((.(....).)).)))))...------------------..))))))....... ( -26.52) >DroEre_CAF1 6231 120 - 1 UGCGCCUCGCUCAAAGUCAAUAUGCGGGCGCAAAUGUACGAAAUGAUGAGACAGACUUGUCAGUAGGUUGGUCACUGCACUGUCAAAAAUCUAACAGAAUUUCAAAAUGAUUAGAAAUCC ((((((.(((.............))))))))).......(((((..((.(((......))).((((........))))................))..)))))................. ( -28.52) >consensus UGCGCCUCGCUCAAAGUCAAUAUGCGGGCGCAAAUGUACGAAAUGAUGAGACAGACUUGUCAGUAGGUUGGUAACUGCACUGCUAAA__________________AAUGAUUAGAAAUUC ((((((.(((.............)))))))))...........(((((((.....)))))))((((........)))).......................................... (-23.22 = -23.55 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:23 2006