Locus 5329

Sequence ID 2R_DroMel_CAF1
Location 17,261,881 – 17,261,979
Length 98
Max. P 0.684623
window8512

overview

Window 2

Location 17,261,881 – 17,261,979
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.64
Mean single sequence MFE -27.23
Consensus MFE -19.92
Energy contribution -20.73
Covariance contribution 0.81
Combinations/Pair 1.23
Mean z-score -1.80
Structure conservation index 0.73
SVM decision value 0.31
SVM RNA-class probability 0.684623
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17261881 98 + 20766785
UGUGCGGAAAAUUGCUGAAGCG---GUAGGCGCGCAGGUGUGCCUAGUUUUCCUUUCCAUUUUCCAUCUUC-UCUUUUUAAGCCGUAGCUUCGGCUUUUCUU
.....((((((((((....)))---.((((((((....))))))))............)))))))......-.......((((((......))))))..... ( -28.00)
>DroSec_CAF1 57691 98 + 1
UGUGCGGAAAAUUGCUGAAUCG---GUAGGCGCGCAGGUGUGCCUAGUUUUCCUUUCCAUUUUCCAUCUUC-UCUUUUUAAGCCGUAGCUUCGGCUUUUCUU
.....(((((((.(..(((..(---.((((((((....)))))))).).)))....).)))))))......-.......((((((......))))))..... ( -27.20)
>DroSim_CAF1 55338 98 + 1
UGUGCGGAAAAUUGCUGAAGCG---GUAGGCGCGCAGGUGUGCCUAGUUUUCCUUUCCAUUUUCCAUCUUC-UCUUUUUAAGCCGUAGCUUCGGCUUUUCUU
.....((((((((((....)))---.((((((((....))))))))............)))))))......-.......((((((......))))))..... ( -28.00)
>DroEre_CAF1 54648 97 + 1
UGUGCGGAAAAUUGCUGAAGCG---GUAGGCGCGCAGGUGUGCCUAGUUUCCUUUUACAUUUUCCAUCUUCCUU--UCUAAGCUGUAGCUUCGGCUUUUCUU
.....((((((..((((((((.---.((((((((....))))))))((........))................--...........)))))))))))))). ( -27.90)
>DroYak_CAF1 53814 98 + 1
UGUGCGGAAAAUUGCUGAAGCG---GUAGGCGCGCAGGUGUGCCUAGUUUCCUUUU-CAUUUUCCAUCUUCCUUUUUUUAAGCUGUAGCUUCGGCUUUUCUU
.....((((((..(((((((((---(((((((((....))))))))....))....-..............(((.....))).....)))))))))))))). ( -27.70)
>DroAna_CAF1 51961 81 + 1
UGUGCGGAAAAUUGCUGAAACGUUGGCAGGCGCGCAGGUGUGUCUUUUUUCUCG-AAGA--------CU-------CCUCGGCUGGA---UUGCCUUUUC--
((((((.....((((..(....)..)))).))))))((...((((((......)-))))--------).-------))..(((....---..))).....-- ( -24.60)
>consensus
UGUGCGGAAAAUUGCUGAAGCG___GUAGGCGCGCAGGUGUGCCUAGUUUCCCUUUCCAUUUUCCAUCUUC_UCUUUUUAAGCCGUAGCUUCGGCUUUUCUU
.....(((((((....(((((.....((((((((....))))))))))))).......)))))))..............((((((......))))))..... (-19.92 = -20.73 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:13 2006