| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,824,585 – 2,824,705 |
| Length | 120 |
| Max. P | 0.813314 |
| Location | 2,824,585 – 2,824,705 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.56 |
| Mean single sequence MFE | -42.30 |
| Consensus MFE | -35.77 |
| Energy contribution | -36.72 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2824585 120 + 20766785 GCCCGUGAAGAAACAAAUCUGGAUUAAGGAGAAGCGCGAGACCUGGAUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA .(((((...........(((.((((.(((.....(....).))).)))).)))....((((((.(((((((((........))))))))).)))))).(((.....)))...))).)).. ( -44.50) >DroPse_CAF1 11927 120 + 1 GACAGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGUGAGACUUGGAUCGAGGAGAAGGUGCAGAUCUGGCGCACCGAGAAGCGUCAGGUCUGGGCAACCGAGAAGCGGCAGGCGUGGAA ............((...(((.((((...(((...(....).))).)))).)))....(.((((((((((((((........)))))))))))((....)).....))).)..))...... ( -39.70) >DroSec_CAF1 13608 120 + 1 GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGGUCGAGGAGAAGGUACAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA .(((((...(..((...(((.((((.(((.....(....).))).)))).)))....((..((.(((((((((........))))))))).))..))........))..)..))).)).. ( -43.30) >DroSim_CAF1 26810 120 + 1 GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGGUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA .(((((...(..((...(((.((((.(((.....(....).))).)))).)))....((((((.(((((((((........))))))))).))))))........))..)..))).)).. ( -45.90) >DroYak_CAF1 13908 120 + 1 GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGAUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAAGUGUGGGCUACCGAGAAGCGGCAGGCGUGGAA (((((.........(((((((((((.........(....).(((......)))....)))))))))))(((((........))))).....)))))..(((....((.....)).))).. ( -40.70) >DroPer_CAF1 11105 120 + 1 GACAGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGUGAGACUUGGAUCGAGGAGAAGGUGCAGAUCUGGCGCACCGAGAAGCGUCAGGUCUGGGCAACCGAGAAGCGGCAGGCGUGGAA ............((...(((.((((...(((...(....).))).)))).)))....(.((((((((((((((........)))))))))))((....)).....))).)..))...... ( -39.70) >consensus GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGAUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA (((..............(((.((((.(((.....(....).))).)))).)))....((..((.(((((((((........))))))))).))..)).(((.....)))..)))...... (-35.77 = -36.72 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:03 2006