| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,240,427 – 17,240,520 |
| Length | 93 |
| Max. P | 0.731867 |
| Location | 17,240,427 – 17,240,520 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.50 |
| Mean single sequence MFE | -29.25 |
| Consensus MFE | -14.74 |
| Energy contribution | -15.63 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.731867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17240427 93 + 20766785 CCCAGAUAGUGAGC------------GUU-----------UUCUAGCUUUCUGGCCAUUCGGCUCGUUAGCAUUUUUCCGGUUAUCUCUU-GCCAGAUUUAUAGAGCUCAUUGCCCC ......((((((((------------...-----------.(((((((..(.((((....)))).)..))).....((.(((........-))).))....)))))))))))).... ( -25.00) >DroSec_CAF1 40020 85 + 1 CCCAGAUAGUGAGC------------G-------------------CUUUCUGGCCAUUCGGCUCGUUAGCAUUUUUCCGGUUAUCUCCU-GCCAGAUUUAUAGAGCUCAUUGCCCC ......((((((((------------(-------------------((..(.((((....)))).)..))).....((.(((........-))).))........)))))))).... ( -24.70) >DroSim_CAF1 43112 85 + 1 ACCAGAUAGUGAGC------------G-------------------CUUUCUGGCCAUUCGGCUCGUUAGCAUUUUUCCGGUUAUCUCCU-GCCAGAUUUAUAGAGCUCAUUGCCCC ......((((((((------------(-------------------((..(.((((....)))).)..))).....((.(((........-))).))........)))))))).... ( -24.70) >DroEre_CAF1 42231 93 + 1 CCCAGAUAGUGAGA------------GCU-----------CUCUAGCUUUCGGGCCAUUCUGCUCGUUAGCAUUUUUCCGGUUAUCUCUU-GCCAGAUUUAUCGAGCUCAUUGCCCC ........(..(((------------(((-----------(....(((..(((((......)))))..))).....((.(((........-))).))......)))))).)..)... ( -27.70) >DroYak_CAF1 41325 93 + 1 CCCAGAUAGUGAGA------------GCU-----------CUCUAGCUGGCUGGCCAUGCGGCUCGUUAGCAUUUUUCCGGUUAUCUCUU-GCCAGAUUUAUCGAGCUCAUUGCCCC ........(..(((------------(((-----------(....((((((.((((....)))).)))))).....((.(((........-))).))......)))))).)..)... ( -30.80) >DroAna_CAF1 38131 115 + 1 --CUGAUAGUGGGCUGGAUUCUGUGGGCUGAUGGGUCUGGGUCUGGUGGCCAGGACAUUCGGCUCGUUAGCAUUUUUCCGGUUAUCUCUGGGCCAGAUUUGUAGUGCUCAUUGCCCC --........((((........((((((..((..((((((.((.(((((((.(((......(((....))).....))))))))))...)).))))))..))...)))))).)))). ( -42.60) >consensus CCCAGAUAGUGAGC____________GCU____________UCUAGCUUUCUGGCCAUUCGGCUCGUUAGCAUUUUUCCGGUUAUCUCUU_GCCAGAUUUAUAGAGCUCAUUGCCCC ......((((((((...............................(((..(.((((....)))).)..))).....((.(((.........))).))........)))))))).... (-14.74 = -15.63 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:53 2006