Locus 5315

Sequence ID 2R_DroMel_CAF1
Location 17,239,850 – 17,239,940
Length 90
Max. P 0.661897
window8490

overview

Window 0

Location 17,239,850 – 17,239,940
Length 90
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 94.95
Mean single sequence MFE -17.80
Consensus MFE -17.43
Energy contribution -17.76
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.98
SVM decision value 0.27
SVM RNA-class probability 0.661897
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17239850 90 + 20766785
AACCACAAAGAAGGUAAUGGAAAAUGCUGAAUCUCAAGUUCUCGAGCUGUA---GCUGGAUAACCAAACAGAAGCAACAGCCACACAUCUUAA
..........(((((..(((....((((.........(((.((.(((....---))).)).)))........))))....)))...))))).. ( -17.13)
>DroSec_CAF1 39453 91 + 1
AACCACAACGAAGGUAAUGGAAAAUGCUGAAUCUCAAGUUCUCGAGCUGUACGAGCUGGAAAACCAAACAGAAGCAACAGCCA--CAUCUUAA
..........(((((..(((....((((.........(((.((.((((.....)))).)).)))........))))....)))--.))))).. ( -18.13)
>DroSim_CAF1 42555 91 + 1
AACCACAACGAAGGUAAUGGAAAAUGCUGAAUCUCAAGUUCUCGAGCUGUACGAGCUGGAAAACCAAACAGAAGCAACAGCCA--CAUCUUAA
..........(((((..(((....((((.........(((.((.((((.....)))).)).)))........))))....)))--.))))).. ( -18.13)
>consensus
AACCACAACGAAGGUAAUGGAAAAUGCUGAAUCUCAAGUUCUCGAGCUGUACGAGCUGGAAAACCAAACAGAAGCAACAGCCA__CAUCUUAA
..........(((((..(((....((((.........(((.((.((((.....)))).)).)))........))))....)))...))))).. (-17.43 = -17.76 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:52 2006