| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,818,613 – 2,818,715 |
| Length | 102 |
| Max. P | 0.823857 |
| Location | 2,818,613 – 2,818,715 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 72.77 |
| Mean single sequence MFE | -38.27 |
| Consensus MFE | -23.69 |
| Energy contribution | -24.33 |
| Covariance contribution | 0.65 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2818613 102 - 20766785 -----UCGGAGUCGGAGAUGCUGCC---CACUCCUGCUCCAAACUUCGCUU----ACUGCUGGCCAUUGCCUGCUCCAAGUUGGCAGUCAGGUAGGCAGCUGCACCCGCUGCCG -----..(((((.((((.((.....---)))))).))))).......((((----(((((..((....(....).....))..))))).)))).((((((.......)))))). ( -39.90) >DroSec_CAF1 7725 102 - 1 -----UCGGAGUCGGAGAUGCUGCC---CACUCCUGCUCCAAGCUUCGCUU----ACUGCUGGCCAUUGCCUGCUCCAAGUCGGCAGUCAGGUAGGCAGCUGCACCCGCUGCAG -----..(((((.((((.((.....---)))))).)))))((((...))))----.(((((.(((((((((.((.....)).))))))..))).)))))(((((.....))))) ( -40.00) >DroSim_CAF1 7378 102 - 1 -----UCGGAGUCGGAGAUGCUGCC---CACUCCUGCUCCAAACUUCGCUU----GCUGCUGGCCAUUGCCUGCUCCAAGUCGGCAGUCAGGUAGGCAGCUGCACCCGCUGCAG -----..(((((.((((.((.....---)))))).))))).......((..----((((((.(((((((((.((.....)).))))))..))).)))))).))........... ( -41.00) >DroYak_CAF1 7879 106 - 1 -----UCGGAGUCCGAGAUGCUGCC---CACUCCUGCUCCAAACUUCGGCUGCUGGCUAUUGGCUUUUGGCUGCUCCAAGUUGGCAGUCAGGUAGGCAGCUGCACCCGCUGCAG -----..(((((..(((.((.....---)))))..)))))..((((.((((((..(((...(((........)))...)))..))))))))))..(((((.......))))).. ( -40.60) >DroAna_CAF1 5991 97 - 1 ------CGCUGCUGCCGAUGCUGCC---CACUCCUGUUGAAAACAUUGGUA-------GUUGGUAUUUGUUAGUUGGAAGUUGGCAGGCAGGUAGGCAGCUGUAC-CGCUGCAA ------.....(((((..(((((((---.(((((..(((((((.((..(..-------.)..)).))).))))..)).))).)))).))))))))(((((.....-.))))).. ( -31.10) >DroPer_CAF1 5824 97 - 1 UGUUGCUGCUGCUGGAGUUGCUGCCAGCCGCUCCUGCACCAUGCUCCAUUC----CCCA-----UGUUGCAUGC----GAUUGGCAUCCA----GGCAGCUGCACCCGCUGCAU ...(((.(((((((((.....(((((..(((...((((.((((........----..))-----)).)))).))----)..)))))))))----.))))).))).......... ( -37.00) >consensus _____UCGGAGUCGGAGAUGCUGCC___CACUCCUGCUCCAAACUUCGCUU____ACUGCUGGCCAUUGCCUGCUCCAAGUUGGCAGUCAGGUAGGCAGCUGCACCCGCUGCAG .......(((((.((((.((........)))))).)))))................(((((....((((((.((.....)).))))))..)))))(((((.......))))).. (-23.69 = -24.33 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:02 2006