| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,220,733 – 17,220,843 |
| Length | 110 |
| Max. P | 0.837716 |
| Location | 17,220,733 – 17,220,843 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 82.11 |
| Mean single sequence MFE | -29.33 |
| Consensus MFE | -13.52 |
| Energy contribution | -16.10 |
| Covariance contribution | 2.58 |
| Combinations/Pair | 1.19 |
| Mean z-score | -3.53 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17220733 110 + 20766785 GCAAAACGCAUUUUCCCUGCUUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUUGUAUUCCGUUUUGCUCCCCGUCGCAGAGAGAGGGAGAG-AACUCUCUUACUCUCUCA ((((((((((.......)))........-...........((((..........))))....)))))))...........(((((((..((((-....))))..))))))). ( -30.30) >DroSec_CAF1 20653 110 + 1 GCAAAACGCAUUUUCCCUGCUUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUCGUUUUCCGUUUUGCUCACCGUCGCAGAGAGAGGGAGAG-AACUCUCUUCCUCUCUCA ((((((((((.......)))..((((..-.....(((....)))..........))))....)))))))...........(((((((((((((-....))))))))))))). ( -35.93) >DroSim_CAF1 23073 110 + 1 GCAAAACGCAUUUUCCCUGCUUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUCGUUUUCCGUUUUGCUCACCGUCGCAGAGAGAGGGAGAG-AACUCUCUUCCUCUCUCA ((((((((((.......)))..((((..-.....(((....)))..........))))....)))))))...........(((((((((((((-....))))))))))))). ( -35.93) >DroEre_CAF1 20983 104 + 1 GCAAAACGCAUU-UCCCUGCUUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUCGCUUUCCGUUUUGCUCGCCAUCACAGUGAGA------GACACUCUCUUUCGCUCUCA ((((((((((..-....)))..((((..-.....(((....)))..........))))....)))))))..........(((((((------((.....))))))))).... ( -23.53) >DroYak_CAF1 20897 111 + 1 GCAAAACGCAUUUUCCCUGCCUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUCGCUUUCCGUUUUGUUCGUCAUCGCAGUGAGAGAGAGAGAAACUCUCUUUCGCUCUCA ((((((((((.......)))..((((..-.....(((....)))..........))))....)))))))........(.((((((((((((.....)))))))))))))... ( -27.83) >DroAna_CAF1 20137 100 + 1 ----AUCGCAAU-U-CCAUCCAAGCGUUUUUAUUUGUUUUUACAUUCCAUUUAUCGCCCUCCCUCUUCCCACUCGGAGCAGCGA-----AGAG-AGCGCGCGCUCUCUCUCA ----.((((...-.-........(((........(((....)))..........))).((((............))))..))))-----((((-(((....))))))).... ( -22.47) >consensus GCAAAACGCAUUUUCCCUGCUUAGCGUU_UUAUUUGUUUUUACAUGCCAUUUAUCGCUUUCCGUUUUGCUCACCGUCGCAGAGAGAGGGAGAG_AACUCUCUUUCUCUCUCA ((((((((((.......)))...(((........(((....)))..........))).....)))))))..........((((.(((((((.....))))))).)))).... (-13.52 = -16.10 + 2.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:38 2006