Locus 5303

Sequence ID 2R_DroMel_CAF1
Location 17,215,389 – 17,215,479
Length 90
Max. P 0.965059
window8474

overview

Window 4

Location 17,215,389 – 17,215,479
Length 90
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 87.18
Mean single sequence MFE -26.68
Consensus MFE -22.30
Energy contribution -22.46
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.84
SVM decision value 1.58
SVM RNA-class probability 0.965059
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17215389 90 + 20766785
CACAGACAGACAUGAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAUCCCGG-----
...............(((.((((((((((....)))))......((((....))))...........)))))))).((........))..----- ( -23.90)
>DroSec_CAF1 15121 89 + 1
------CAGACAUGAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAUGUCGGGAACA
------..((((((......((((...((((((..(((((((..((((....)))).)).)).)))..))))))))))....))))))(....). ( -29.50)
>DroSim_CAF1 16715 89 + 1
------CAGACAUGAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAUGUCGGGAAUA
------..((((((......((((...((((((..(((((((..((((....)))).)).)).)))..))))))))))....))))))....... ( -29.20)
>DroEre_CAF1 15474 84 + 1
---------ACAUCAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACUACCCAGGAA--
---------..........((((((..((((((..(((((((..((((....)))).)).)).)))..)))))).((.....))..)))))).-- ( -26.50)
>DroYak_CAF1 15605 84 + 1
---------ACACUUACACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAACGCAGGAA--
---------..........((((((((..((((..(((((((..((((....)))).)).)).)))..))))))).(.....)....))))).-- ( -24.30)
>consensus
______CAGACAUGAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAUCCCGGGAA__
...................((((((((..((((..(((((((..((((....)))).)).)).)))..))))))).(.....)....)))))... (-22.30 = -22.46 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:37 2006