Locus 5301

Sequence ID 2R_DroMel_CAF1
Location 17,209,026 – 17,209,122
Length 96
Max. P 0.976011
window8472

overview

Window 2

Location 17,209,026 – 17,209,122
Length 96
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 91.72
Mean single sequence MFE -24.89
Consensus MFE -21.76
Energy contribution -21.62
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -2.30
Structure conservation index 0.87
SVM decision value 1.76
SVM RNA-class probability 0.976011
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17209026 96 + 20766785
UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACAA--GACAGGCACGCGGAAGAAAAAA
........(((((((.(((.......(((((((((....))))))).))((.....)).....-...........--....))).).))))))...... ( -24.80)
>DroSec_CAF1 8692 93 + 1
UAACAAAACUUUUGGCGCCAUUUUCAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACAA--GACAGGCACGCGGAAGAAA---
........(((((((.(((((((((.(((((((((....))))))).))((.....))..)))-)))..(.....--)...))).).))))))...--- ( -26.30)
>DroSim_CAF1 8672 93 + 1
UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACAA--GACAGGCACGCGGAAGAAA---
........(((((((.(((.......(((((((((....))))))).))((.....)).....-...........--....))).).))))))...--- ( -24.80)
>DroEre_CAF1 8915 93 + 1
UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACAA--GACAGUCACGCGGAAGAAC---
.........(((((((((........(((((((((....))))))).)).....)))))))))-...........--..........(....)...--- ( -23.62)
>DroYak_CAF1 8966 95 + 1
UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACACGCGACAGGCACGCGGAAGAAC---
.........(((((((((........(((((((((....))))))).)).....)))))))))-..........((((.......)))).......--- ( -27.92)
>DroAna_CAF1 9048 94 + 1
UGACAAAACUUUUGGCGCCAUUUUUAGUUUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAAAAAUAAAAACAA--AUCGCGCGCACGGCAUGGA---
.........(((((((((........(((((((((....))))))).)).....)))))))))............--.(((.((.....)).))).--- ( -21.92)
>consensus
UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA_AAUAACAACAA__GACAGGCACGCGGAAGAAA___
.........(((((((((........(((((((((....))))))).)).....))))))))).................................... (-21.76 = -21.62 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:35 2006