Locus 5296

Sequence ID 2R_DroMel_CAF1
Location 17,196,481 – 17,196,577
Length 96
Max. P 0.584773
window8466

overview

Window 6

Location 17,196,481 – 17,196,577
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 85.76
Mean single sequence MFE -20.60
Consensus MFE -14.29
Energy contribution -15.09
Covariance contribution 0.80
Combinations/Pair 1.09
Mean z-score -1.76
Structure conservation index 0.69
SVM decision value 0.10
SVM RNA-class probability 0.584773
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17196481 96 + 20766785
GUUCGAAACUACAAAAGACAAGGCCUGAAAACUAAGCUACUAGCGCCAAAAACAGAGUAGGUUUUCCAAAGAGUGUGAAAUAGUUUGGAACCCAAG
((((.((((((....(.((..((((((.............))).)))............((....)).....)).)....)))))).))))..... ( -18.02)
>DroSec_CAF1 12286 93 + 1
GUUCGAAACUACAAAAUACGAGUCCUGAAAACUAAGCUACUAGCGCCAAAAGCAGAGUAGGUAUUCAGAUAAUUGUGAGAUAGUUUGGAACCC---
((((.((((((.....(((((...(((((.(((..(((.((.((.......))))))).))).)))))....)))))...)))))).))))..--- ( -23.10)
>DroSim_CAF1 12463 93 + 1
GUUCGAAACUACAAAAUACGAGUCCUGAAAACUAAGCUACUAGCGCCAAAAGCAGAGUAGGUAUUCAGAUAAUUGUGAGAUAGUUUGUAACCC---
(((..((((((.....(((((...(((((.(((..(((.((.((.......))))))).))).)))))....)))))...))))))..)))..--- ( -17.30)
>DroEre_CAF1 12559 94 + 1
GUUCGAAACUACAAAAUUCGAGCCCUGAAAACAAAGCUACUAGCACCAAAAACAUAGUAGGUUUUCAGAAGA--GUGAAAUAGUUUGGAAUCCAGG
((((.((((((....((((.....((((((((....((((((............))))))))))))))..))--))....)))))).))))..... ( -23.20)
>DroYak_CAF1 12760 94 + 1
GUUCGAAACUACAAAACUUGAGUCCUGAGAACAAAGCUACUAGCACCAAAAACAUAGUAGGUUUUCAGAAGA--GUGAAAUUGUUUGGAAUCCAAG
((((.((((......((((...((.(((((((....((((((............))))))))))))))).))--))......)))).))))..... ( -21.40)
>consensus
GUUCGAAACUACAAAAUACGAGUCCUGAAAACUAAGCUACUAGCGCCAAAAACAGAGUAGGUUUUCAGAAGA_UGUGAAAUAGUUUGGAACCCA_G
((((.((((((.............((((((((....(((((..............)))))))))))))............)))))).))))..... (-14.29 = -15.09 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:29 2006