| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,174,269 – 17,174,370 |
| Length | 101 |
| Max. P | 0.824723 |
| Location | 17,174,269 – 17,174,370 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.33 |
| Mean single sequence MFE | -17.35 |
| Consensus MFE | -10.03 |
| Energy contribution | -10.95 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17174269 101 + 20766785 UUCAUUAUCAAGCUCACCACUAAUAUUGUGCUUUGCUUGUGAACUUUUAUGUUGUGAAAUAGCUGAGUAUUUCGAAUCUUUACAAAAC----AAUCCAUCUAUUU (((.(((.(((((....(((.......)))....))))))))((((...((((....))))...)))).....)))............----............. ( -13.00) >DroSec_CAF1 41306 101 + 1 UUCAUUAUCGAGCUCACCACUAAUUCUGUGCUUUGCUUGUGAACUUUUGUGUUGUGAAAUAGCAGAGUAUUUCGAUACUUUACAAAAC----AAUUCAUCUAUUU ........(((((....(((.......)))....)))))((((.(((((((..((((((((......))))))...))..))))))).----..))))....... ( -17.10) >DroSim_CAF1 42231 101 + 1 UUCAUUAUCGAGCUCAUCACUAAUUCUGUGCUUUGCUUGUGAACUUUUGUGUUGUGAAAUAGCAGAGUAUUUCGAUACCUUACAAAAC----AAUCCAUCUAUUU .....(((((((...............((((((((((.....((.........)).....)))))))))))))))))...........----............. ( -16.26) >DroEre_CAF1 41668 105 + 1 AUAUAAAUCAAGCUCACCACUAAUUCUGUGCUUUGCUUGAGAACUUUUGUGUUGUGAAAUACCAAUGUAUUUCGAUACUCUACUAAACAACGCAUCUAAAUAUUU .......((((((....(((.......)))....)))))).......(((((((((((((((....)))))))(.....)......))))))))........... ( -23.60) >DroYak_CAF1 42367 101 + 1 AUUCUAACCAAGCUCACCACUAAUUCUGUGCUUUGCUUGUGAACUUUUGUAUUGUGAAAUACAAAUGUAUUUCGAUACUUUACAAAAC----CAUUCACAUAUUU .........((((....(((.......)))....))))(((((.(((((((..(((((((((....)))))))...))..))))))).----..)))))...... ( -22.60) >DroAna_CAF1 48559 92 + 1 --UAUAAACAAAC-CAUCUCU-AUUUUGUGCUUUUUUU---AACUUUUA-AUGGUGAAAUCAUUCUG-AUUUCAACUGUCCACUAAAC----CAUUUGUACAUUU --...........-.......-....(((((.......---........-(((((((((((.....)-))))).))))).........----.....)))))... ( -11.55) >consensus UUCAUAAUCAAGCUCACCACUAAUUCUGUGCUUUGCUUGUGAACUUUUGUGUUGUGAAAUAGCAGAGUAUUUCGAUACUUUACAAAAC____AAUCCAUAUAUUU ........(((((....(((.......)))....))))).....(((((((...(((((((......)))))))......))))))).................. (-10.03 = -10.95 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:13 2006