Locus 5284

Sequence ID 2R_DroMel_CAF1
Location 17,168,528 – 17,168,626
Length 98
Max. P 0.568409
window8445

overview

Window 5

Location 17,168,528 – 17,168,626
Length 98
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.53
Mean single sequence MFE -18.62
Consensus MFE -12.10
Energy contribution -12.72
Covariance contribution 0.62
Combinations/Pair 1.24
Mean z-score -1.57
Structure conservation index 0.65
SVM decision value 0.07
SVM RNA-class probability 0.568409
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17168528 98 - 20766785
GCGCAGUGUGAACAAAGCCUAAACUUCAUUCCGAGAAUGAAUAAUCUGAUUAAAAA-AUACAACUAUAUGUCUAAAUAUAUAUG------UUUGCUGCGUUUUUC
(((((((..(((((..........(((((((...)))))))...............-.......(((((((....)))))))))------))))))))))..... ( -19.60)
>DroSec_CAF1 35699 98 - 1
GCGCAGUGUGAACAAAGCCUAAACUUCAUUCCGAGAAUGAAUAAUCUGAUUAAAAA-AUAAAACUAUAUGUCUAAAUAUAUAUG------UUUGCUGCGUUUUUC
(((((((..(((((..........(((((((...)))))))...............-.......(((((((....)))))))))------))))))))))..... ( -19.60)
>DroSim_CAF1 36723 98 - 1
GCGCAGUGUGAACAAAGCCUAAACUUCAUUCCGAGAAUGAAUAAUCUGAUUAAAAA-AUAAAACUAUAUGUCUAAAUAUAUAUG------UUUGCUGCGUUUUUC
(((((((..(((((..........(((((((...)))))))...............-.......(((((((....)))))))))------))))))))))..... ( -19.60)
>DroEre_CAF1 36682 98 - 1
GCGCAGUGUGAACAAAGCUUAAACUUCAUUCCGCGAAUGAAUAAUCUGAUUAAAAA-AUAAAAGUAUUUGUCUAUACAGAUAUU------UUUGGUGCGCUUUUC
((((((((.(((..(((......)))..))))))......................-.(((((((((((((....)))))))))------)))).)))))..... ( -22.90)
>DroYak_CAF1 36223 98 - 1
GCGCAGUGUGAACAAAGCCUGAACUUCAUUCCGCGAAUGAAUAAUCUGAUUAAAAA-AUAAAAGUAUUUGUAUAAAUAGUUAUU------GUUGCUGCGUUUUUC
(((((((...(((((.........(((((((...)))))))(((.(((.(((..((-(((....)))))...))).))))))))------))))))))))..... ( -17.70)
>DroPer_CAF1 53039 99 - 1
CCCCAUAAUGAAAAAAGAUUGUGCUUCAUUCCAAGAAUGAAUAAUCUGAUUAAAUAAACCACAAUAUU------AAUAUACAAGAAAUCAUUAUACGAGUUCCUC
....(((((((....(((((((...((((((...))))))))))))).....((((........))))------.............)))))))........... ( -12.30)
>consensus
GCGCAGUGUGAACAAAGCCUAAACUUCAUUCCGAGAAUGAAUAAUCUGAUUAAAAA_AUAAAACUAUAUGUCUAAAUAUAUAUG______UUUGCUGCGUUUUUC
(((((((.................(((((((...))))))).......................(((((((....)))))))...........)))))))..... (-12.10 = -12.72 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:10 2006