Locus 5275

Sequence ID 2R_DroMel_CAF1
Location 17,147,592 – 17,147,692
Length 100
Max. P 0.616653
window8432

overview

Window 2

Location 17,147,592 – 17,147,692
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 77.94
Mean single sequence MFE -20.63
Consensus MFE -14.64
Energy contribution -15.53
Covariance contribution 0.89
Combinations/Pair 1.07
Mean z-score -1.43
Structure conservation index 0.71
SVM decision value 0.17
SVM RNA-class probability 0.616653
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17147592 100 + 20766785
UGAGUGGAUGAACUCAAGGAAAGGAAAGGAUUGUAUUUCAUGGAUUGCGUUCUCUAUUCUCUUUAUUCAUUGAAGACUACAACAUUUUUCCGAUCGCUUU
(((((......)))))..((..(((((((.(((((....(((((........)))))..((((((.....)))))).)))))..)))))))..))..... ( -19.80)
>DroSec_CAF1 14913 81 + 1
UGAAUGC--------------UGGAAAGGAUUGUAUUUCAUGGAUGGCGAGCUC-----UUGUUAUUCAUUGGAGACUACAACAUUUUUCCCAUUGCUUU
.....((--------------.(((((((.((((((((((((((((((((....-----)))))))))))..)))).)))))..)))))))....))... ( -21.20)
>DroSim_CAF1 15232 81 + 1
UGAAUGC--------------UGGAAAGGAUUGUAUUUCAUGGAUGGCGAGCUC-----UUGUUAUUCAUUGGAGACUACAACAUAUUUCCCAUUGCUUU
.....((--------------.(((((.(.((((((((((((((((((((....-----)))))))))))..)))).))))))...)))))....))... ( -20.90)
>consensus
UGAAUGC______________UGGAAAGGAUUGUAUUUCAUGGAUGGCGAGCUC_____UUGUUAUUCAUUGGAGACUACAACAUUUUUCCCAUUGCUUU
......................(((((((.((((((((((((((((((((.........)))))))))).)))))..)))))..)))))))......... (-14.64 = -15.53 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:57 2006