Locus 527

Sequence ID 2R_DroMel_CAF1
Location 2,811,798 – 2,811,904
Length 106
Max. P 0.922613
window991

overview

Window 1

Location 2,811,798 – 2,811,904
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 74.69
Mean single sequence MFE -26.00
Consensus MFE -20.21
Energy contribution -20.93
Covariance contribution 0.72
Combinations/Pair 1.12
Mean z-score -1.23
Structure conservation index 0.78
SVM decision value 1.15
SVM RNA-class probability 0.922613
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2811798 106 - 20766785
AUGUAGCAACAAUAUUUCAACUUUUAAAUGUUUAGAUUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAAAUC
.((((((((....((((.(((........))).)))).......((......))..))))))))....((((((((..((........))..))))))))...... ( -30.10)
>DroSec_CAF1 1126 84 - 1
AGGC----------------------AAUGCUUUGAUUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGAUC
.(((----------------------(..((..................))))))....((((......(((((((..((........))..)))))))))))... ( -27.67)
>DroSim_CAF1 670 84 - 1
AGGU----------------------AAUGCUUAGAUUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGAUC
.(((----------------------(..((.(((..........))).))))))....((((......(((((((..((........))..)))))))))))... ( -27.90)
>DroEre_CAF1 1089 97 - 1
---------CUAUAUAUGUACAUCGAUAUGAUUAAGAUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGGUC
---------.....(((((......)))))...........((((((.(((.((....)).)))......((((((..((........))..))))))))).))). ( -26.80)
>DroWil_CAF1 1152 84 - 1
AGUU----------------------AUUGACAAGCUACUUACUGCUAUGCUGCCAUUACUACGACUUUUGGGGCGUGGCACUUGAAAAUUUCUACCCAACAGAUC
((..----------------------(((..((((........(((((((((.(((.............))))))))))))))))..)))..))............ ( -17.12)
>DroYak_CAF1 1155 92 - 1
---------UAAUAUAUAUA-----AUAUGUUUCGUAUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGAUC
---------.(((((((...-----)))))))...........(((...((.......)).))).((.((((((((..((........))..)))))))).))... ( -26.40)
>consensus
AGGU______________________AAUGAUUAGAUUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGAUC
...........................................(((...((.......)).))).((.((((((((..((........))..)))))))).))... (-20.21 = -20.93 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:57 2006