Locus 5269

Sequence ID 2R_DroMel_CAF1
Location 17,130,646 – 17,130,766
Length 120
Max. P 0.541749
window8423

overview

Window 3

Location 17,130,646 – 17,130,766
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.71
Mean single sequence MFE -38.40
Consensus MFE -32.16
Energy contribution -31.28
Covariance contribution -0.88
Combinations/Pair 1.18
Mean z-score -1.27
Structure conservation index 0.84
SVM decision value 0.02
SVM RNA-class probability 0.541749
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17130646 120 + 20766785
CGUUCGUCUUUGAUUGGCCAAGCUUAGGUGACUAUCCAGUCGCGAGAGCGAUGUUGAGUGGAUAGCGGAUGCGGGCUGUUGAAGAUGAAGGUGAUGGUGGAUAACACUUGUCGAUGGCUG
(.((((((((..((.((((..((.....((.((((((((((((....)))))......)))))))))...)).))))))..)))))))).)((((((((.....))).)))))....... ( -41.40)
>DroSec_CAF1 66537 117 + 1
CGUUCGUCUCUGGUUGGCCAAGCUUAGGUGACUAUCCAGUCGCGAGAGCGAUGUUGAGUGGAUAGCAGAUGCGGGCUGUUGAAGAU---GGUGAUGGUGAAUAACACUUGUCGAUGGAUU
.((((((.((((....(((.......)))..((((((((((((....)))))......))))))))))).)))))).(((((....---((((.((.....)).))))..)))))..... ( -36.60)
>DroSim_CAF1 57382 117 + 1
CGUUCGUCUCUGGUUGGCCAAGCUUAGAUGACUAUCCAGUCGCGAGAGCGAUGUUGAGUGGAUAGCAGAUGCGGGCUGUUGAAGAU---GGUGAUGGUGAAUAACACUUGUCGAUGGAUU
.((((((((((...(((((..((.....((.((((((((((((....)))))......)))))))))...)).)))))....))).---...(((((((.....))).))))))))))). ( -36.70)
>DroEre_CAF1 72059 117 + 1
CGUUCGCCUCUGAUUUGCCAAGCUUAGGUGACUAUCCAAUCGGGAGAGCGAUGUUGAGUGGAUGGUGGAAGCGGGCUGUUGAAGAU---GGUGAUGGUGGAUGACACUUGUCGAUGGCUU
...((((((((.....(((..((((...(.((((((((.((((.(......).)))).)))))))).))))).)))......))).---))))).(((.(.((((....)))).).))). ( -36.50)
>DroYak_CAF1 73956 117 + 1
CGUUCGCCUCUGAUUGGCCAAGCUAAGGUGACUAUCCAAUCGCGAAAGCGAUGUUGAGUGGAUGGCGGAAGCGGGCUGUUGAAGAU---GGUGAUGGUGGAUGACACUUGUCGAUGGCUU
...((((((((...(((((......((....))((((((((((....)))))......))))).((....)).)))))....))).---))))).(((.(.((((....)))).).))). ( -40.80)
>consensus
CGUUCGUCUCUGAUUGGCCAAGCUUAGGUGACUAUCCAGUCGCGAGAGCGAUGUUGAGUGGAUAGCGGAUGCGGGCUGUUGAAGAU___GGUGAUGGUGGAUAACACUUGUCGAUGGCUU
.((((((.((((....(((.......)))..((((((((((((....)))))......))))))))))).))))))...............((((((((.....))).)))))....... (-32.16 = -31.28 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:47 2006