Locus 526

Sequence ID 2R_DroMel_CAF1
Location 2,810,341 – 2,810,437
Length 96
Max. P 0.524626
window990

overview

Window 0

Location 2,810,341 – 2,810,437
Length 96
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 67.07
Mean single sequence MFE -19.67
Consensus MFE -9.23
Energy contribution -10.90
Covariance contribution 1.67
Combinations/Pair 1.14
Mean z-score -1.85
Structure conservation index 0.47
SVM decision value -0.02
SVM RNA-class probability 0.524626
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2810341 96 - 20766785
UUACAUUUAAGUUAUGUU----UUAAAUCAGUGAGUAUUAAG------------UCGCUUUAAUUGAUUAAUU--CAGUCUUCAGCUGUA-UAUUCAGCUAACUGAAAUACAUGU
............(((((.----...(((((((((((......------------..))))..)))))))..((--((((....(((((..-....))))).))))))..))))). ( -19.10)
>DroSec_CAF1 16971 100 - 1
----AUUUAAGUAAUGUU----UUAAAUCUGUCACAAUUAAGUUAAGCAAUCGAUCGCUUUUAUUGAUUAAUU--CAGUCUUCAGCUGUA-GAUUCAGCUUACUUAAAUA----U
----((((((((((....----......(((....((((((...((((........))))...))))))....--)))......((((..-....)))))))))))))).----. ( -21.00)
>DroYak_CAF1 16715 109 - 1
UUACAUUUGAGUUAUGUCAAUAUUCAAUCGGCCACACUUAAAUAAAGCAAUCAAACGCUUUU-UUGAUGAAUGCCCACUUGUAAGCUGUAAGAUUUCGCUUACUCAAAUA-----
....((((((((...((.((...((...((((..((.(((((.(((((........))))))-))))))..(((......))).))))...)).)).))..)))))))).----- ( -18.90)
>consensus
UUACAUUUAAGUUAUGUU____UUAAAUCAGUCACAAUUAAGU_AAGCAAUC_AUCGCUUUUAUUGAUUAAUU__CAGUCUUCAGCUGUA_GAUUCAGCUUACUCAAAUA____U
....((((((((((.......................((((...((((........))))...)))).................((((.......))))))))))))))...... ( -9.23 = -10.90 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:56 2006