| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,118,115 – 17,118,215 |
| Length | 100 |
| Max. P | 0.938727 |
| Location | 17,118,115 – 17,118,215 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -27.43 |
| Consensus MFE | -18.08 |
| Energy contribution | -19.83 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.938727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17118115 100 + 20766785 AGCUGCCGCCAAUAA-AACAUGGC------UAUCUCAUUUAA---------AGCCCAUUCGAUGAGUUGGCAACCAAGUUUGCACACUUCUUUGGCGGCGGCCAUAUUUCACCAUC .(((((((((((...-......((------((.((((((.((---------......)).)))))).))))....((((......))))..))))))))))).............. ( -32.50) >DroSec_CAF1 54109 100 + 1 AGCUGCCGCCAAUAA-AACAUGGC------UAUCUCAUUUAA---------AGCCCAUUCGAUGAGUUGGCAACCAAGUUUGCGCACUUCUUUGGCGGCGGCCAUAUUUCACCAUC .(((((((((((...-......((------((.((((((.((---------......)).)))))).))))....((((......))))..))))))))))).............. ( -32.50) >DroSim_CAF1 44869 100 + 1 AGCUGCCGCCAAUAA-AACAUGGC------UAUCUCAUUUAA---------AGCCCAUUCGAUGAGUUGGCAACCAAGUUUGCACACUUCUUUGGCGGCGGCCAUAUUUCACCAUC .(((((((((((...-......((------((.((((((.((---------......)).)))))).))))....((((......))))..))))))))))).............. ( -32.50) >DroEre_CAF1 59515 83 + 1 AGCUG------------------C------UAUCACAUUUAA---------AGACCAUUCGAUGAGUUGGCGACCGAGUUUGCACACUUCUUUGGCGGCGGCCAUAUUUCACCAUC .((((------------------(------(..((.......---------.((....))...(((.((((((......)))).)).)))..))..)))))).............. ( -15.60) >DroYak_CAF1 61249 101 + 1 AGCUGCCGCCAAUAAAAACAUGGC------UAUCUUAUUAAA---------AGACCAUUCGAUGAGUUGGCAACCAAGUUUGCACACUUCUUUGGCGGCGGCCAUAUUUCACCAUC .(((((((((((..........((------((.(((((..((---------......))..))))).))))....((((......))))..))))))))))).............. ( -31.20) >DroAna_CAF1 66378 113 + 1 AGCUGCCGCCAAUAA-AAUGUUGCGUUUUCUUUAUCAUUUCAAAAAGAAUAACACCAUUCGAUGACAAGACAACG--UUCUGCACACUUCUUUCUCGGUGGCCAUAUUUAAUCAAG .((..(((.......-..(((.(((((.((((..(((((.......((((......))))))))).)))).))))--)...)))...........)))..)).............. ( -20.26) >consensus AGCUGCCGCCAAUAA_AACAUGGC______UAUCUCAUUUAA_________AGACCAUUCGAUGAGUUGGCAACCAAGUUUGCACACUUCUUUGGCGGCGGCCAUAUUUCACCAUC .(((((((((((.....................((((((.....................))))))...((((......))))........))))))))))).............. (-18.08 = -19.83 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:21 2006