| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,089,828 – 17,089,919 |
| Length | 91 |
| Max. P | 0.944500 |
| Location | 17,089,828 – 17,089,919 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.53 |
| Mean single sequence MFE | -22.56 |
| Consensus MFE | -16.59 |
| Energy contribution | -16.90 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.944500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17089828 91 + 20766785 AUCCUACCGA------AAAU-C-CCC-CCUUUUUGAAUAGCUCUGUGCAUAUGCAUUCGCUUGGAAAUGCGUGCAACUGACAGUUGCAUGCAACAAAAUC .(((...(((------(((.-.-...-..))))))...(((...((((....))))..))).)))..((((((((((.....))))))))))........ ( -25.90) >DroSec_CAF1 27114 74 + 1 AU----------------------CC-C---UUUGAAUAGCUCUGUGCAAAUGCAUUCGCUUGGAAAUGCUUGGAACUGACAGUUGCAUGCAACAAAAUC ..----------------------..-.---((((...(((...((((....))))..)))......(((.((.(((.....))).)).))).))))... ( -14.70) >DroSim_CAF1 27320 88 + 1 AACCCAUCGA------AUAC-C-CCC-C---UUUGAAUAGCUCUGUGCAAAUGCAUUCGCUUGGAAAUGCGUGCAACUGACAGUUGCAUGCAACAAAAUC ...(((((((------(...-.-...-.---)))))..(((...((((....))))..))))))...((((((((((.....))))))))))........ ( -25.60) >DroEre_CAF1 27552 87 + 1 AACCCACCGU------AAAC---CCC-C-U--UUGAAUAGCUCUGCGCAAAUGCAUUCGCUUGGAAAUGCGUGCAACUGACAGUUGCAUGCAACAAAAUC ........((------....---..(-(-.--.(((((.((...........)))))))...))...((((((((((.....))))))))))))...... ( -21.10) >DroYak_CAF1 29295 91 + 1 -ACCCACCGA------AAGCGCCCCC-C-UUUUGGAAUAGCUCUGUGCAAAUGCAUUCGCCUGGAAAUGCGUGCAACUGACAGUUGCAUGCAACAAAAUC -..(((((((------(((.......-)-))))))....((...((((....))))..)).)))...((((((((((.....))))))))))........ ( -29.50) >DroAna_CAF1 35931 95 + 1 AUCCUGCCGAUCCCCUCAUC---CCCUCGUCUUUAAAUAUUUCUGUGUGGAUGCAUUCGCUUGGAAAUUUAUGCAACUGACAGUUGCAUGCAACAAAA-- .(((...(((......((((---(.(.((..............)).).)))))...)))...)))....((((((((.....))))))))........-- ( -18.54) >consensus AACCCACCGA______AAAC___CCC_C_U_UUUGAAUAGCUCUGUGCAAAUGCAUUCGCUUGGAAAUGCGUGCAACUGACAGUUGCAUGCAACAAAAUC .......................................((...((((....))))..)).......((((((((((.....))))))))))........ (-16.59 = -16.90 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:12 2006