Locus 523

Sequence ID 2R_DroMel_CAF1
Location 2,803,846 – 2,803,936
Length 90
Max. P 0.993554
window987

overview

Window 7

Location 2,803,846 – 2,803,936
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 90.42
Mean single sequence MFE -34.16
Consensus MFE -29.74
Energy contribution -29.58
Covariance contribution -0.16
Combinations/Pair 1.22
Mean z-score -2.11
Structure conservation index 0.87
SVM decision value 2.41
SVM RNA-class probability 0.993554
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2803846 90 - 20766785
CGUUGGUACCAACAAUUGGCCAGGAUAGAACUUGAAGAGCGUCUUGGCCAGACUUUUCUCCGUCUCUGGG--AAGUCGGGCCGAGAUGCAUG
.((((....)))).......((((......))))....(((((((((((.(((((..(.........)..--))))).)))))))))))... ( -38.00)
>DroSec_CAF1 10656 90 - 1
CGUCGGCACCAACAAUUGGCCAGGCUAGAACUUGAAGAGCGUCUUGGCCAGACUUUUCUCCGUCUCUGGG--AAGUCGGGCCGAGAUGCAUG
.((((((...........))).))).............(((((((((((.(((((..(.........)..--))))).)))))))))))... ( -37.20)
>DroSim_CAF1 12045 90 - 1
CGUCGGCACCAACAAUUGGCCAGGCUAGAACUUGAAGAGCGUCUUGGCCAGACUUUUCUCCGUCUCUGGG--AAGUCGGGCCGAGAUGCAUG
.((((((...........))).))).............(((((((((((.(((((..(.........)..--))))).)))))))))))... ( -37.20)
>DroEre_CAF1 10871 91 - 1
CGUCGGCACCAACAAUUGGCCAUGGUAGAACUUGAAGAGCAUCUUGGCCAGACUUUUCUCCGUCGCUGUGAGACGUC-GGCUGAGUUGCAUG
(((.(((...........))))))..............(((.((..(((.(((...((((((....)).)))).)))-)))..)).)))... ( -24.90)
>DroYak_CAF1 10543 89 - 1
CGU-GGCACCAACAAUUGGCCAUGGUGGAACUUGAAGAGCAUCUUGGCCAGACUUUUCCUCGUCUAUGUG--GAGUCGGGCUGAGAUGCAUG
(((-(((...........))))))..............((((((..(((.(((...(((.((....)).)--))))).)))..))))))... ( -33.50)
>consensus
CGUCGGCACCAACAAUUGGCCAGGCUAGAACUUGAAGAGCGUCUUGGCCAGACUUUUCUCCGUCUCUGGG__AAGUCGGGCCGAGAUGCAUG
....(((...........))).................(((((((((((.(((((...((((....))))..))))).)))))))))))... (-29.74 = -29.58 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:53 2006