| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,932,071 – 16,932,166 |
| Length | 95 |
| Max. P | 0.990227 |
| Location | 16,932,071 – 16,932,166 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 93.64 |
| Mean single sequence MFE | -22.17 |
| Consensus MFE | -20.49 |
| Energy contribution | -20.35 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.92 |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.990227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16932071 95 - 20766785 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU-GGCU---A ....(((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))).....((.....-))..---. ( -21.40) >DroSec_CAF1 29584 97 - 1 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU-GGCUCU-A (((((((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))).....((.....-))))))-. ( -25.10) >DroSim_CAF1 29636 97 - 1 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU-GGCUGU-A ....(((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))).((((((.....-)).)))-) ( -22.40) >DroEre_CAF1 30060 95 - 1 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU-GGCU---G ....(((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))).....((.....-))..---. ( -21.40) >DroYak_CAF1 30416 96 - 1 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUUCGGCU---G .((((((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))..........))))....---. ( -21.30) >DroAna_CAF1 31499 99 - 1 AGAGGGCCACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGUUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUAUUAUGUAUGUCUGUUGGCACUUG .(((.....)))((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).............((((....)))).... ( -21.40) >consensus AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU_GGCU___A .(((.....)))((((((((((((((.((..(((((.(((....)))))))).)).))))))))))))))............................. (-20.49 = -20.35 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:06 2006