Locus 5199

Sequence ID 2R_DroMel_CAF1
Location 16,917,173 – 16,917,271
Length 98
Max. P 0.766574
window8310

overview

Window 0

Location 16,917,173 – 16,917,271
Length 98
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 90.18
Mean single sequence MFE -22.81
Consensus MFE -20.72
Energy contribution -21.12
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 0.91
SVM decision value 0.52
SVM RNA-class probability 0.766574
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16917173 98 + 20766785
UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUACC------------GUUCGCUCAGGCUUUGUCCGU
.((((............((((((((...))))))))............((((...((((.....))))..))))...------------.........))))........ ( -23.20)
>DroSim_CAF1 14836 98 + 1
UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUCCC------------GUUCGCUCAGGCUUUGUCCGU
.((((............((((((((...))))))))............((((...((((.....))))..))))...------------.........))))........ ( -22.60)
>DroEre_CAF1 15184 98 + 1
UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUCCC------------UCUCGCUCAGGCUUUGUCCAU
.((((............((((((((...))))))))............((((...((((.....))))..))))...------------.........))))........ ( -22.60)
>DroYak_CAF1 15507 110 + 1
UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUCCCUCUGCCUCCCCCUCUCGCUCAGGCUUUGUCCAU
.((((............((((((((...))))))))............((((...((((.....))))..))))........................))))........ ( -22.60)
>DroAna_CAF1 16625 98 + 1
UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGCUUUGCUUCC------------UCACUUGCCGGCUUUGUCCAU
.((((............((((((((...)))))))).............)).))...((((((((.((.........------------......)).))).)))))... ( -23.07)
>consensus
UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUCCC____________UCUCGCUCAGGCUUUGUCCAU
.((((............((((((((...))))))))............((((...((((.....))))..))))........................))))........ (-20.72 = -21.12 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:59 2006