| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,904,004 – 16,904,110 |
| Length | 106 |
| Max. P | 0.597301 |
| Location | 16,904,004 – 16,904,110 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.15 |
| Mean single sequence MFE | -32.85 |
| Consensus MFE | -15.47 |
| Energy contribution | -16.92 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16904004 106 - 20766785 UGGUUGGCGCGGGUGACAAACAGUGCUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACACG-----AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCCACCGU .(((.(((((((((........((((((((((.....)))))).....))))...(((..(((....-----.....))).)))..........))))...)))))))).. ( -34.30) >DroSec_CAF1 1820 106 - 1 UGGUUGGCGCGGGUGACAAACAGCACUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACACG-----AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCCACCGA .(((.(((((((((........(((.((((((.....))))))....))).....(((..(((....-----.....))).)))..........))))...)))))))).. ( -32.30) >DroSim_CAF1 1867 103 - 1 UGGUUGGCGCGGGUGACAAACAGCACUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACACG-----AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCGAC--- ((((..((((((....).....(((.((((((.....))))))....))).))).))..))))((((-----.....((....))(.....)........))))....--- ( -30.30) >DroEre_CAF1 1912 105 - 1 UGGAUGGCGCGGGUGACAAACAGGACUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACAGG-----AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCCACCG- .((.((((((((....).....((..((((((.....))))))............(((..(((..(.-----...).))).)))............))..))))))))).- ( -34.60) >DroYak_CAF1 1891 105 - 1 UGGAUGGCGCGGGUGACAAACAGCACUGGCAAUAAUUUUCCCAUAAUUGCGCGCAGCUGACCACACG-----AAACAUGGAAGCAGAAAAUCAAACGCAACGUCCUAACG- .(((((..(((..(((....((((..(((((((.((......)).))))).))..)))).(((....-----.....)))..........)))..)))..))))).....- ( -26.80) >DroPer_CAF1 6338 96 - 1 UGGG--AGGCGGACCACACACAGCAG-GACCACAAUUCGGGCAUAAUUGUCCACAGAUGGUCACAUGUCUAGAGACAUGUAG--AGACCAUUGAGUCCUGC---------- (((.--.......)))......((((-((((.......(((((....)))))...((((((((((((((....)))))))..--.)))))))).)))))))---------- ( -38.80) >consensus UGGUUGGCGCGGGUGACAAACAGCACUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACACG_____AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCCACCG_ ....((((((((....)...((((...(((((.....))))).....((....)))))).........................................))))))).... (-15.47 = -16.92 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:55 2006