Locus 519

Sequence ID 2R_DroMel_CAF1
Location 2,800,331 – 2,800,441
Length 110
Max. P 0.840066
window982

overview

Window 2

Location 2,800,331 – 2,800,441
Length 110
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 84.11
Mean single sequence MFE -36.14
Consensus MFE -28.15
Energy contribution -27.79
Covariance contribution -0.36
Combinations/Pair 1.18
Mean z-score -1.92
Structure conservation index 0.78
SVM decision value 0.75
SVM RNA-class probability 0.840066
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2800331 110 + 20766785
UCAGAUCGAUGGAUUCGAUCGGGUUCGGUGGGGACACUGUAACC-----ACUGUAGCUAUGACACUCUAACCCGCUGACUUACUGCCGCAACCCGGUGGGU----UUUUCGAUUUCAUU
...((((((.....)))))).(((((((((....))))).))))-----.........((((......(((((((((................))))))))----)........)))). ( -34.83)
>DroSec_CAF1 7173 114 + 1
-CAGAUCGAUGGAUUCGAUCGGGUUCGGUGGGGACACUGUAACCAUGCCACUGUAGCUAUGACACUCUAACCCGCUGACUUACUACCGCAACCCGAUGGGU----UUUUCGAUUUCAUU
-.(((((((..(((((.((((((((((((((((.((.((....))))))....((((................)))).....)))))).))))))))))))----)..))))))).... ( -37.69)
>DroSim_CAF1 7221 114 + 1
-CAGAUCGAUGGAUUCGAUCGGGUUCGGUGGGGACACUGUAACCAUGACACCGUAGCUAUGACACUCUAACCCGCUGACUUACUACCGCAGCCCGAUGGGU----UUUUCGAUUUCAUU
-.(((((((..(((((.((((((((((((((((....(((.......))))).((((................)))).....)))))).))))))))))))----)..))))))).... ( -36.09)
>DroEre_CAF1 7458 99 + 1
GAAGAUCGAUGGUUUCGAUCGGGUUCGGUGGGGA-AGU---------------CAGCUAUGACACUGUAACCCGCUGACUUACUACCGCAACCCGAUGGGU----UUUUCGAUUUCAUU
((.((((((.....((.((((((((((((((..(-(((---------------((((................)))))))).)))))).)))))))).)).----...))))))))... ( -43.69)
>DroYak_CAF1 7196 103 + 1
GACGAUCGAUGGUUUCGAUCGGAUUCGGUGGGGC-ACU---------------CAGCUAUGACACUGUAACCCGCUGACUUACUGCCGCAACUCGAUGGGUUUGUUUUUCGAUUUCAUU
..(((((((.....)))))))...((((((((..-...---------------(((........)))...))))))))................((((((.(((.....))).)))))) ( -28.40)
>consensus
_CAGAUCGAUGGAUUCGAUCGGGUUCGGUGGGGACACUGUAACC_____AC_GUAGCUAUGACACUCUAACCCGCUGACUUACUACCGCAACCCGAUGGGU____UUUUCGAUUUCAUU
..(((((((.....((.(((((((((((((((....)................((((................)))).....)))))).)))))))).))........))))))).... (-28.15 = -27.79 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:47 2006