| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,853,040 – 16,853,141 |
| Length | 101 |
| Max. P | 0.569839 |
| Location | 16,853,040 – 16,853,141 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.86 |
| Mean single sequence MFE | -36.02 |
| Consensus MFE | -21.32 |
| Energy contribution | -21.55 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569839 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16853040 101 + 20766785 AACCACAAGAAGCGAUCCGAGUGGGUGAACGAGGACUUUGAGCUGCCCACCACCGAGGAGCUAUUCAGCGACCUGGGCAUCUGGUGGUAGGCUUGGA--CGAC ............((.(((..((......))..))).((..((((..((((((((.(((.(((....)))..))).))....))))))..))))..))--)).. ( -34.20) >DroVir_CAF1 3895 103 + 1 AGGCAGGGCAAACGCUCCGAGUGGGUCAACGAGGACUUCGAGCUGCCCACCACCGAGGAACUGUUCAGCGAUUUGGGUAUUUGGUGGUAGCCUCUACGCACAC ((((.(((((...((((.((...((((......)))))))))))))))(((((((((....((..(((....)))..))))))))))).)))).......... ( -37.10) >DroGri_CAF1 3586 97 + 1 AGACAAGGUAAACGUUCCGAGUGGGUCAAUGAAGAAUUUGAGCUGCCAACCACUGAGGAGCUGUUCAGCGAUUUGGGCAUUUGGUGGUAACACCU------UC ....(((((.........(.(..(.((((........)))).)..)).(((((..((....(((((((....)))))))))..)))))...))))------). ( -25.80) >DroEre_CAF1 3623 101 + 1 AGCAACAAGAAGCGAUCCGAGUGGGUGAACGAGGACUUUGAGCUGCCCACCACCGAGGAGCUAUUCAGCGACCUGGGCAUCUGGUGGUAGGCUUAGA--GGCA ...........((..(((..((......))..)))(((((((((..((((((((.(((.(((....)))..))).))....))))))..))))))))--))). ( -39.70) >DroYak_CAF1 3463 101 + 1 AACAACAAGAAGCGAUCCGAGUGGGUGAACGAGGACUUUGAGCUGCCCACCACCGAGGAGCUAUUCAGCGACCUGGGCAUCUGGUGGUAGGCUUAGG--GGCA ...........((..(((..((......))..)))(((((((((..((((((((.(((.(((....)))..))).))....))))))..))))))))--))). ( -38.90) >DroAna_CAF1 3481 103 + 1 AACAGAAAAAACCGAUCCGAAUGGGUCAACGAGGACUUUGAGCUACCCACCACCGAGGAGCUGUUCAGCGACCUGGGUAUCUGGUGGUAGUUCCAAGUUCCAC .............(((((....)))))...(.((((((.((((((((.((((((.(((.(((....)))..))).)))....))))))))))).))))))).. ( -40.40) >consensus AACAACAAGAAGCGAUCCGAGUGGGUCAACGAGGACUUUGAGCUGCCCACCACCGAGGAGCUAUUCAGCGACCUGGGCAUCUGGUGGUAGGCUCAGA__CGAC ...............(((..((......))..)))..((((((((((.((((((.(((.(((....)))..))).))....))))))))).)))))....... (-21.32 = -21.55 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:37 2006