Locus 5161

Sequence ID 2R_DroMel_CAF1
Location 16,798,788 – 16,798,901
Length 113
Max. P 0.953137
window8252

overview

Window 2

Location 16,798,788 – 16,798,901
Length 113
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 76.19
Mean single sequence MFE -21.89
Consensus MFE -15.46
Energy contribution -15.69
Covariance contribution 0.23
Combinations/Pair 1.10
Mean z-score -1.80
Structure conservation index 0.71
SVM decision value 1.43
SVM RNA-class probability 0.953137
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16798788 113 - 20766785
CUACACGCUAUACGAUCUACACAGCCUGCCUUAGAAUCCA----UACAUACAUAAUCCAUAUCUAUACAUCUGGGGCAUUCAAAAGAUCUGAUAGAGUGAUAAAUACC-AAAGUUUC--C
...(((.((((..(((((........(((((((((....(----((.(((.........))).)))...)))))))))......)))))..)))).))).........-........--. ( -20.84)
>DroEre_CAF1 5454 101 - 1
CUACACUCUAUACGAUUUACACAGCCUGCCUUAGAGUCUACAUGU------------------UAUA-AUCUGGGGUAUUCAAAAGAUCUGAUAGAGUGAUAAAUACCCAAAGGGACAUA
...((((((((..(((((........(((((((((..........------------------....-.)))))))))......)))))..)))))))).......(((...)))..... ( -24.60)
>DroYak_CAF1 5508 96 - 1
CUACACGCUAUACGACUUACACAGCCUGCCUUAGAGUCUA----U------------------UAUACAUCUGGGGUAUUCAAAAGAUGUAAUAGAGUGUUAAAUACCCAGAGGGAC--A
..((((.(((((((.(((........(((((((((((...----.------------------...)).))))))))).....))).))).)))).))))......(((...)))..--. ( -20.22)
>consensus
CUACACGCUAUACGAUUUACACAGCCUGCCUUAGAGUCUA____U__________________UAUACAUCUGGGGUAUUCAAAAGAUCUGAUAGAGUGAUAAAUACCCAAAGGGAC__A
...(((.((((..(((((........(((((((((..................................)))))))))......)))))..)))).)))..................... (-15.46 = -15.69 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:04 2006