Locus 5155

Sequence ID 2R_DroMel_CAF1
Location 16,777,519 – 16,777,627
Length 108
Max. P 0.990276
window8243

overview

Window 3

Location 16,777,519 – 16,777,627
Length 108
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 84.10
Mean single sequence MFE -30.43
Consensus MFE -26.66
Energy contribution -26.98
Covariance contribution 0.32
Combinations/Pair 1.06
Mean z-score -2.42
Structure conservation index 0.88
SVM decision value 2.21
SVM RNA-class probability 0.990276
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16777519 108 - 20766785
AAAAAAAAC----AAAAAAAAACAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGGACCAAUUAGUUGGCAGUUCGAAGUUAUUAAGUUGUGCCGCUUAUGUCCUUGA
.........----.........((((((((..((((.((((((((((((.((.......(.((((....)))))...)).)))))))...)))))..))))..)))))))). ( -29.30)
>DroSec_CAF1 89409 102 - 1
------AGC----AAAAAAAAGCAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGGACCAAUUAGUUGGCAUUUCGAAGUUAUUAAGUUGUGCCGCUUAUGUCCUUGA
------...----.........((((((((..((((.(((((.((((.......(((..(.((((....))))..)..)))....)))).)))))..))))..)))))))). ( -29.50)
>DroSim_CAF1 87985 106 - 1
------AACCAAAAAAAAAAAGCAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGGACCAAUUAGUUGGCAUUUCGAAGUUAUUAAGUUGUGCCGCUUAUGUCCUUGA
------................((((((((..((((.(((((.((((.......(((..(.((((....))))..)..)))....)))).)))))..))))..)))))))). ( -29.50)
>DroEre_CAF1 87384 89 - 1
----------------------CAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUAGGGACCAAUUAGUUGGCAGUUCGAAAUUAUUAAGCUGUGCCGCUUAUGC-CUUGA
----------------------..((((((..((((..((((.(((((.((..........)))))))))))((((((..(.....)..))))))..))))..)))-))).. ( -25.30)
>DroYak_CAF1 93604 92 - 1
--------------------CACAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGCACCAAUUAGUUGGCUGUUCGAAAUUAUUAAGUGGUGCCGCUUCUGCCCUUGG
--------------------..((((((((..(((...((((((.......))))))(((((((.(((((...............))))).))))))))))..)))))))). ( -38.56)
>consensus
______A_C____AAAAAAAAACAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGGACCAAUUAGUUGGCAGUUCGAAGUUAUUAAGUUGUGCCGCUUAUGUCCUUGA
......................((((((((..((((.((((((((((((.((.......(.((((....)))))...)).)))))))...)))))..))))..)))))))). (-26.66 = -26.98 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:55 2006