| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,754,934 – 16,755,037 |
| Length | 103 |
| Max. P | 0.870635 |
| Location | 16,754,934 – 16,755,037 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.32 |
| Mean single sequence MFE | -31.46 |
| Consensus MFE | -22.16 |
| Energy contribution | -23.12 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16754934 103 + 20766785 ----------GGGG-------GGGUGGUUUUCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGCAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUUAAGAUUGU ----------..((-------((((.((((.((((((((.((((.((((((((....))))))))..))))...))))..((.....)))))))))).))))))................ ( -29.10) >DroSec_CAF1 67134 113 + 1 ---CACCAAAGGAAGGGCCACGAAAGGCAUCCCAGCCUUAUAGUCAAGCUACCCUAAGGUGAUUUCUGCUGGCAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUUAAGA---- ---.....(((.((((((((...(((((......))))).(((((((...(((....)))((((((((....))..))))))...)))))))....)))))))).....)))....---- ( -31.80) >DroSim_CAF1 64932 113 + 1 ---UACCAAAGGAAGGGCCACGAAAGGCAUCCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGCAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUUAAGA---- ---.....(((.(((((((((....).....((((((((.((((.((((((((....))))))))..))))...))))..((.....))))))...)))))))).....)))....---- ( -32.60) >DroEre_CAF1 64441 120 + 1 CUUCCACAAAGGAAGGGCCAGGAAAGACAUGCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGAAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUAAAGAUGGC (((((.....)))))...............(((((((((.(((((((((((((....))))))(((((.(....)))))).....)))))))...)))))(((((.....))))).)))) ( -33.50) >DroYak_CAF1 70035 120 + 1 CCCCCACAAAGAAAGAGCCAUGAAAGGCAUCUCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCAGCUGAAAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUAAAGAUGGC ...(((.......((((((......))).)))..(((((.(((((((((((((....))))))((((........))))......)))))))...)))))(((((.....))))).))). ( -30.30) >consensus ___CAACAAAGGAAGGGCCACGAAAGGCAUCCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGCAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUUAAGAU_G_ ............((((((((.....(((......)))...(((((((...(((....)))((((((..........))))))...)))))))....))))))))................ (-22.16 = -23.12 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:48 2006