Locus 5148

Sequence ID 2R_DroMel_CAF1
Location 16,751,577 – 16,751,677
Length 100
Max. P 0.642162
window8234

overview

Window 4

Location 16,751,577 – 16,751,677
Length 100
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 77.18
Mean single sequence MFE -19.28
Consensus MFE -14.30
Energy contribution -14.70
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.74
SVM decision value 0.23
SVM RNA-class probability 0.642162
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16751577 100 + 20766785
AUGAAAACUAUUACAAUGGCAAUUUAAUUGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUGGUAAAUGGUCAUUUUGUAAA-----------------G
..........((((((((((.(((((..(((.........)))((((((((((((((....))))).)))))))))....))))).)))))..))))).-----------------. ( -19.80)
>DroSec_CAF1 63869 80 + 1
AUGAAAACUAUUACAAUGGCAAUUAAU-UGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUG-------------------A-----------------G
.......((((((.....((((....)-)))....))))))((((((((((((((((....))))).)))))))).)))-------------------.-----------------. ( -15.50)
>DroSim_CAF1 61641 81 + 1
AUGAAAACUAUUACAAUGGCAAUUAAUUUGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUG-------------------A-----------------G
.......((((((.....((((.....))))....))))))((((((((((((((((....))))).)))))))).)))-------------------.-----------------. ( -16.30)
>DroEre_CAF1 61003 110 + 1
AUGAAAACUAUUACAAUGGCAAUUUAAUUGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUG-------AGCGUUUUGUAUAGCCAAAUGGUGCACGGUA
.((...((((((......(((((...))))).......((((.((((((((((((((....))))).)))))))))...-------.((.....))...)))))))))).))..... ( -22.10)
>DroYak_CAF1 66588 110 + 1
AUGAAAACUAUUACAAUGGCAAUUUAAUUGCAAUAUAAUUGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAACG-------AGCGUUUUGUAGAGCCAAACUGUGCAUUGUG
...........((((((.(((((...))))).........(((((....((((((.((.....(.((((.........)-------))).)...)).))))))...))))))))))) ( -22.70)
>consensus
AUGAAAACUAUUACAAUGGCAAUUUAAUUGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUG_________C_UUUUGUA_A_________________G
.......((((((.....((((.....))))....))))))..((((((((((((((....))))).)))))))))......................................... (-14.30 = -14.70 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:46 2006