Locus 5137

Sequence ID 2R_DroMel_CAF1
Location 16,723,514 – 16,723,605
Length 91
Max. P 0.679752
window8215

overview

Window 5

Location 16,723,514 – 16,723,605
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 74.96
Mean single sequence MFE -24.78
Consensus MFE -14.88
Energy contribution -14.85
Covariance contribution -0.03
Combinations/Pair 1.19
Mean z-score -1.44
Structure conservation index 0.60
SVM decision value 0.30
SVM RNA-class probability 0.679752
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16723514 91 - 20766785
AGGGAGUGCAUUAUGCUGUGCCCAUGCUGGGUAUACCCUUCUACUGUGAUCAGGUAUUU-----GUAUAUUUCACUAAUUAUAUAAAUAA-CUGCUU
((((...((.....))(((((((.....)))))))))))...........(((.(((((-----(((((..........)))))))))).-)))... ( -23.40)
>DroPse_CAF1 33593 90 - 1
AAGGAGUGCACUACGCCGUGCCCAUGCUGGGCAUCCCCUUCUACUGCGAUCAGGUAGGG-----ACU-UUCCCCCGAAGUGGCUAAUUCA-CUGCUA
.((.((((...((.(((((((((.....)))))).((((....(((....)))..))))-----(((-((.....))))))))))...))-)).)). ( -28.80)
>DroSec_CAF1 31586 95 - 1
AGGGAGUGCAUUAUGCUGUGCCCAUGCUGGGUAUUCCCUUCUACUGUGAUCAGGUAUAUGUAC-AUAUAUUUUACUAAUUAUAUAAAUAA-CUGCUC
.(((.((((((.((((.((((((.....)))))).........(((....)))))))))))))-(((((.((....)).)))))......-...))) ( -19.60)
>DroEre_CAF1 32498 91 - 1
AGGGAGUGCACUACGCUGUGCCCAUGCUGGGUAUACCCUUCUACUGUGAUCAGGUACUC-----GUAUAUUUCAAUUAUUAUAUAAAUCU-CUGUUU
...((((((.......(((((((.....)))))))........(((....)))))))))-----(((((..........)))))......-...... ( -19.90)
>DroYak_CAF1 38065 91 - 1
AGGGAGUGCACUACGCUGUGCCCAUGCUGGGUAUACCCUUCUAUUGUGAUCAGGUACUU-----GUUUAUUCCGAUUAUUAUAUAGAUAU-CUGUUU
((((((((.....))))((((((.....)))))).))))(((((.((((((.((.....-----.......))))))))...)))))...-...... ( -23.90)
>DroMoj_CAF1 43423 88 - 1
AGGGCGUGCACUACGCCGUGCCCAUGCUGGGCAUGCCCUUCUACUGCGACCAGGUGAGC----GACU-U----AGUAGUCAAGUAGAAGAUUUGUUU
..((((((...))))))((((((.....))))))...((((((((((..........))----((((-.----...)))).))))))))........ ( -33.10)
>consensus
AGGGAGUGCACUACGCUGUGCCCAUGCUGGGUAUACCCUUCUACUGUGAUCAGGUACUU_____AUAUAUUUCACUAAUUAUAUAAAUAA_CUGCUU
((((...((.....))(((((((.....)))))))))))....(((....)))............................................ (-14.88 = -14.85 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:29 2006