Locus 512

Sequence ID 2R_DroMel_CAF1
Location 2,783,274 – 2,783,377
Length 103
Max. P 0.699364
window969

overview

Window 9

Location 2,783,274 – 2,783,377
Length 103
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 81.19
Mean single sequence MFE -35.25
Consensus MFE -23.83
Energy contribution -25.95
Covariance contribution 2.12
Combinations/Pair 1.23
Mean z-score -1.69
Structure conservation index 0.68
SVM decision value 0.35
SVM RNA-class probability 0.699364
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2783274 103 + 20766785
GCU------GUGAAUAAGCCCGGUCUGACAACUUUGAGCCGGGCUUA-GCACUUGAGUUGUUUGCGAACUGUGGCCCAA-ACACAAUUGGCGCGGUUUCUCAAGUCU-GAGC
(((------.....((((((((((..((.....))..))))))))))-(.(((((((....(((((...((((......-.)))).....)))))...)))))))).-.))) ( -37.20)
>DroSec_CAF1 17250 103 + 1
GCU------GCGAAUAAGCCCGGUCUGACAACUUUGAGCCGGGCUUA-GCACUUGAGUUGUUUGCGAACUGUGGCCCAA-ACACCAUUGGCGCGGUUUCUCAAGUCU-GAGC
(((------((...((((((((((..((.....))..))))))))))-))(((((((....(((((....((((.....-...))))...)))))...)))))))..-.))) ( -38.60)
>DroSim_CAF1 31547 103 + 1
GCU------GUGAAUAAGCCCGGUCUGACAACUUUGAGCCGGGCUUA-GCACUUGAGUUGUUUGCGAACUGUGGCCCAA-ACACAAUUGGCGCGGUUUCUCAAGUCU-GAGC
(((------.....((((((((((..((.....))..))))))))))-(.(((((((....(((((...((((......-.)))).....)))))...)))))))).-.))) ( -37.20)
>DroEre_CAF1 14645 109 + 1
GCUACAUGUAUGAAUAAGCCUGGUCCGACAACUUUGAGCCGGGCUUA-GCACUUGAGUUGUUUGCGAACUGUGGCCCGA-GCACAAUUGGCGCGGUUUCUCAAGUCU-GAGC
(((.((........(((((((((..(((.....)))..)))))))))-(.(((((((........((((((((..((((-......)))))))))))))))))))))-)))) ( -36.80)
>DroYak_CAF1 14695 103 + 1
GCA------AUGAAUAAGCCCGGUCUGACAACUUUGAGCCGGGCUUA-GCACUCGAGUUGUUUGCGAACUGUGGCCCAA-ACACAAUUGCCGCGCUUUUUCAAGUCU-AAGC
...------.((((((((((((((..((.....))..))))))))))-((.....(((((....).))))(((((....-........)))))))...)))).....-.... ( -29.20)
>DroPer_CAF1 15485 99 + 1
GCU------GG--GUCAGC-----CUGUCCGGUUAAAGCCGGGCUUAGGCACUUGAUUUGUGCAUUAAAGAUCGCAAAACACACGAUUAAUGUUAUUUUUCAGGCCUUAAGC
(((------((--(((.((-----(((((((((....)))))))..))))...(((.....((((((...((((.........))))))))))......))))))))..))) ( -32.50)
>consensus
GCU______GUGAAUAAGCCCGGUCUGACAACUUUGAGCCGGGCUUA_GCACUUGAGUUGUUUGCGAACUGUGGCCCAA_ACACAAUUGGCGCGGUUUCUCAAGUCU_GAGC
(((...........(((((((((..(((.....)))..)))))))))...(((((((....(((((...((((........)))).....)))))...)))))))....))) (-23.83 = -25.95 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:35 2006