Locus 511

Sequence ID 2R_DroMel_CAF1
Location 2,773,351 – 2,773,441
Length 90
Max. P 0.500000
window968

overview

Window 8

Location 2,773,351 – 2,773,441
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 82.19
Mean single sequence MFE -27.47
Consensus MFE -18.51
Energy contribution -20.07
Covariance contribution 1.56
Combinations/Pair 1.20
Mean z-score -1.44
Structure conservation index 0.67
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2773351 90 + 20766785
UCCAAGGUCGUGUCUGGCUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCUGUUCCGAUCGAGUGAAGGGACUUUGGGA
(((((((((((((((((((........)).)))))).))..(((((....((((...)))).))))).............))))))))). ( -33.90)
>DroSec_CAF1 14452 80 + 1
UCCAAGGUCGAGUCCGGCUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCCGGUCCGAUCGAGUGAAGG----------
..((.(((((.(.(((.............(((((....))))).......((((...))))))).))))))...))....---------- ( -25.90)
>DroSim_CAF1 28722 90 + 1
UCCAAGGUCGAGUCUGGCUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCCGUUCCGAUCGAGUGAAGGGACUUUGGGA
(((((((((.(((((((((........)).)))))))....(((((....((((...)))).))))).............))))))))). ( -33.60)
>DroEre_CAF1 11729 87 + 1
UUCAAGGUCGAGUCUGGCUUUAUUUUUAGCCCAGGCUGCUGCGAAUUUAUGGCCAUUGGCCCGGUCCGAUCGAGUGAAGGGCCCUUG---
..((((((.((((((((((........)).))))))).).))........((((...)))).(((((..((....)).)))))))))--- ( -26.90)
>DroYak_CAF1 11780 87 + 1
UUCAAGGUCGUGUCUGGUUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCCGAUCCGAUCGAGUGAAGGGUCUUUG---
((((.(((((..((...............(((((....))))).......((((...)))).))..)))))...)))).........--- ( -25.00)
>DroAna_CAF1 12302 77 + 1
UCCAAGGUUAAGGCUGGUUUUAUUUUUAGCC-UGGCUGCUGGGAAUUUAUGGCCCUUGCCCUUUUCUUUGCUUUCAAA------------
..(((((..(((((.((((..(((((((((.-.....)))))))))....))))...).))))..)))))........------------ ( -19.50)
>consensus
UCCAAGGUCGAGUCUGGCUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCCGUUCCGAUCGAGUGAAGGG_CUUUG___
.....((((((...(((((..(((((((((.......)))))))))....))))))))))).(((((...........)))))....... (-18.51 = -20.07 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:34 2006