| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,306,606 – 1,306,890 |
| Length | 284 |
| Max. P | 0.994509 |
| Location | 1,306,606 – 1,306,720 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.44 |
| Mean single sequence MFE | -26.35 |
| Consensus MFE | -24.42 |
| Energy contribution | -24.43 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1306606 114 - 20766785 AGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACA------GCGACAACAAAACAUGUGUCAACUGCCAGACAUCCUGAGCAAUAUUAAUAACACUCGGCGA .(((((......((((((.(((.....((((......))))......((....------))............))).))))))(((((.....))).))..............))))).. ( -26.30) >DroSec_CAF1 24986 114 - 1 AGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACA------GCGACAACAAAACAUGUGUCAACUGCCAGACAUCCUGAGCAAUAUUAAUAACACUCGGCGA .(((((......((((((.(((.....((((......))))......((....------))............))).))))))(((((.....))).))..............))))).. ( -26.30) >DroSim_CAF1 3977 114 - 1 AGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACA------GCGACAACAAAACAUGUGUCAACUGCCAGACAUCCUGAGCAAUAUUAAUAACACUCGGCGA .(((((......((((((.(((.....((((......))))......((....------))............))).))))))(((((.....))).))..............))))).. ( -26.30) >DroEre_CAF1 7800 120 - 1 AGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACAGCGACAGCGACAACAAAACAUGUGUCAACUGCCAGACAUCCUGAGCAAUAUUAAUAACACUCGGCGA .(((((..(((..((((..((......((((......))))......))..))))..))).((((.((.....))))))...((((((.....))).))).............))))).. ( -26.50) >consensus AGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACA______GCGACAACAAAACAUGUGUCAACUGCCAGACAUCCUGAGCAAUAUUAAUAACACUCGGCGA .(((((......((((((.(((.....((((......))))......((..........))............))).))))))(((((.....))).))..............))))).. (-24.42 = -24.43 + 0.00)
| Location | 1,306,646 – 1,306,736 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.17 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -16.38 |
| Energy contribution | -16.38 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1306646 90 - 20766785 CUACGGCCAAA------------------------GCUGAAGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACA------GCGACAACAAAACAUGUGUCA ...((((....------------------------))))..(((..(((....)))..))).(((((((((......))))......((....------)).............))))). ( -20.60) >DroSec_CAF1 25026 90 - 1 CUACGGCCAAC------------------------GCUGAAGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACA------GCGACAACAAAACAUGUGUCA ...((((....------------------------))))..(((..(((....)))..))).(((((((((......))))......((....------)).............))))). ( -20.50) >DroSim_CAF1 4017 90 - 1 CUACGGCCAAC------------------------GCUGGAGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACA------GCGACAACAAAACAUGUGUCA ...........------------------------((((..(((.....((((((.....(((...))).....)).)))).....)))..))------))((((.((.....)))))). ( -20.90) >DroEre_CAF1 7840 120 - 1 CUAUCGCCGAAGCUGAACCAGAAGCAGAAGCUGAAGCUGAAGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACAGCGACAGCGACAACAAAACAUGUGUCA ...........(((........)))....((((..((((..(((.....((((((.....(((...))).....)).)))).....)))..))))..))))((((.((.....)))))). ( -30.30) >consensus CUACGGCCAAA________________________GCUGAAGCUGAAACUGAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACA______GCGACAACAAAACAUGUGUCA ...................................(((..((((........))))..))).(((((((((......))))......((..........)).............))))). (-16.38 = -16.38 + 0.00)
| Location | 1,306,720 – 1,306,810 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.70 |
| Mean single sequence MFE | -20.35 |
| Consensus MFE | -12.54 |
| Energy contribution | -12.79 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1306720 90 + 20766785 UCAGC------------------------UUUGGCCGUAGCUACAGC------UACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAA (((((------------------------((((((.(((((....))------)))......(((......)))....)))).....))))))).......................... ( -18.80) >DroSec_CAF1 25100 90 + 1 UCAGC------------------------GUUGGCCGUAGCUACAGC------UACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAA (((((------------------------(.((((.(((((....))------))).)))).)..............(((.....))).))))).......................... ( -18.50) >DroSim_CAF1 4091 96 + 1 CCAGC------------------------GUUGGCCGUAGCUACAGCUACAGCUACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAA .((((------------------------(((((..(((((....)))))(((....))).)))))...........(((.....))).))))........................... ( -20.90) >DroEre_CAF1 7920 113 + 1 UCAGCUUCAGCUUCUGCUUCUGGUUCAGCUUCGGCGAUAGCUACAGC-------ACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAA ((((((((((((..((((..(((((..((....))...))))).)))-------).))))..(((......)))...........).))))))).......................... ( -23.20) >consensus UCAGC________________________GUUGGCCGUAGCUACAGC______UACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAA ................................(((.((((((..............))))))(((......)))....)))..(((((...(((.......)))....)))))....... (-12.54 = -12.79 + 0.25)
| Location | 1,306,720 – 1,306,810 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.70 |
| Mean single sequence MFE | -27.62 |
| Consensus MFE | -20.54 |
| Energy contribution | -20.60 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1306720 90 - 20766785 UUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGUA------GCUGUAGCUACGGCCAAA------------------------GCUGA (((..((((((((...(((.......)))..))))))))..))).........((((....((((((------((....))))))))...)------------------------))).. ( -26.20) >DroSec_CAF1 25100 90 - 1 UUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGUA------GCUGUAGCUACGGCCAAC------------------------GCUGA (((..((((((((...(((.......)))..))))))))..)))..........((((...((((((------((....))))))))))))------------------------..... ( -26.70) >DroSim_CAF1 4091 96 - 1 UUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGUAGCUGUAGCUGUAGCUACGGCCAAC------------------------GCUGG (((..((((((((...(((.......)))..))))))))..)))..........(((((((((((((((....)))))))))...))))))------------------------..... ( -29.40) >DroEre_CAF1 7920 113 - 1 UUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGU-------GCUGUAGCUAUCGCCGAAGCUGAACCAGAAGCAGAAGCUGAAGCUGA ..........................(((((((.....((((..(((.......)))((((((((.-------....)))))))))))))))))))..(((.(((....)))....))). ( -28.20) >consensus UUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGUA______GCUGUAGCUACGGCCAAA________________________GCUGA .....((((((((...(((.......)))..))))))))(((..(((.......))).(((((((((........))))))))).)))................................ (-20.54 = -20.60 + 0.06)
| Location | 1,306,736 – 1,306,850 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.16 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -25.59 |
| Energy contribution | -25.40 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1306736 114 + 20766785 CUACAGC------UACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAAUAGCAGGGACACCCGUAGCCGCAUCAGUCGGCUACGAAGA ....(((------....))).....((((...((((((((...(((((...(((.......)))....)))))((....)).))).)))))...((((((((....).))))))))))). ( -29.00) >DroSec_CAF1 25116 114 + 1 CUACAGC------UACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAAUAGCAGGGACACCCGUAGCCGCAUCAGCCAGCUGCGAAGA ....(((------....))).....((((...((((((((...(((((...(((.......)))....)))))((....)).))).)))))...(((((.((....))..))))))))). ( -24.90) >DroSim_CAF1 4107 120 + 1 CUACAGCUACAGCUACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAAUAGCAGGGACACCCGUAGCCGCAUCAGCCGGCUGCGAAGA ....((((........)))).....((((...((((((((...(((((...(((.......)))....)))))((....)).))).)))))...((((((((....).))))))))))). ( -29.70) >DroEre_CAF1 7960 113 + 1 CUACAGC-------ACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAAUAGCAGGGACACCCGUAGCCGCAUCAGCCGGCUACGAGGA ....(((-------...)))............((((((((...(((((...(((.......)))....)))))((....)).))).)))))(((((((((((....).)))))))).)). ( -28.50) >consensus CUACAGC______UACAGCUACCAACUUCCCUUGUCCUGCCACGUGUAAGCUGACAUUUUUUCAUUACUACACAUUUCAAUAGCAGGGACACCCGUAGCCGCAUCAGCCGGCUACGAAGA .........................((((...((((((((...(((((...(((.......)))....)))))((....)).))).)))))...((((((((....).))))))))))). (-25.59 = -25.40 + -0.19)
| Location | 1,306,736 – 1,306,850 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.16 |
| Mean single sequence MFE | -42.48 |
| Consensus MFE | -41.19 |
| Energy contribution | -41.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.97 |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.994509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1306736 114 - 20766785 UCUUCGUAGCCGACUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGUA------GCUGUAG ..((((((((((.(....)))))))))))..(((((....(((..((((((((...(((.......)))..))))))))..)))....)))))......((((....------))))... ( -38.80) >DroSec_CAF1 25116 114 - 1 UCUUCGCAGCUGGCUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGUA------GCUGUAG .....(((((((((....))((((((.((..(((((....(((..((((((((...(((.......)))..))))))))..)))....)))))..)).)))))).))------))))).. ( -43.40) >DroSim_CAF1 4107 120 - 1 UCUUCGCAGCCGGCUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGUAGCUGUAGCUGUAG .....((((((((((...((((((((.((..(((((....(((..((((((((...(((.......)))..))))))))..)))....)))))..)).)))))))))))))..))))).. ( -48.30) >DroEre_CAF1 7960 113 - 1 UCCUCGUAGCCGGCUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGU-------GCUGUAG ..........((((....((((((((.((..(((((....(((..((((((((...(((.......)))..))))))))..)))....)))))..)).))))))))-------))))... ( -39.40) >consensus UCUUCGCAGCCGGCUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUGGCAGGACAAGGGAAGUUGGUAGCUGUA______GCUGUAG .....(((((.......(((((((((.((..(((((....(((..((((((((...(((.......)))..))))))))..)))....)))))..)).)))))))))......))))).. (-41.19 = -41.20 + 0.00)
| Location | 1,306,770 – 1,306,890 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.36 |
| Mean single sequence MFE | -40.90 |
| Consensus MFE | -39.25 |
| Energy contribution | -39.38 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.857374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1306770 120 - 20766785 AUACACGAUAGGGGAAGUAGCAACAGCUGCUCGGCAGAGUUCUUCGUAGCCGACUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUG .....((((((((((((((((....))))))...........((((((((((.(....)))))))))))..))))..))))))..((((((((...(((.......)))..)))))))). ( -41.10) >DroSec_CAF1 25150 120 - 1 AUGCACGAUAGGGGAAGUAGCAACAGCUGCUCGGCAGAGUUCUUCGCAGCUGGCUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUG .....((((((((((.(((((..(((((((..((.((....)))))))))))((....)).))))).....))))..))))))..((((((((...(((.......)))..)))))))). ( -39.90) >DroSim_CAF1 4147 120 - 1 AUACACGAUAGGGGAAGUAGCAACAGCUGCUCGGCAGAGUUCUUCGCAGCCGGCUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUG .....((((((((((.(((((..((...((.((((.(((...)))...))))))...))..))))).....))))..))))))..((((((((...(((.......)))..)))))))). ( -38.60) >DroEre_CAF1 7993 120 - 1 ACACACGAUAGGGGAAGUAGCAACAGCUGCUCGGCAGAGUUCCUCGUAGCCGGCUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUG .(((.((((((((((((((((....))))))...........((((((((((.(....)))))))))))..))))..))))))....((((((...(((.......)))..))))))))) ( -44.00) >consensus AUACACGAUAGGGGAAGUAGCAACAGCUGCUCGGCAGAGUUCUUCGCAGCCGGCUGAUGCGGCUACGGGUGUCCCUGCUAUUGAAAUGUGUAGUAAUGAAAAAAUGUCAGCUUACACGUG .....((((((((((((((((....))))))...........((((((((((.(....)))))))))))..))))..))))))..((((((((...(((.......)))..)))))))). (-39.25 = -39.38 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:54 2006