| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,569,866 – 16,569,986 |
| Length | 120 |
| Max. P | 0.803412 |
| Location | 16,569,866 – 16,569,986 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.50 |
| Mean single sequence MFE | -34.95 |
| Consensus MFE | -17.29 |
| Energy contribution | -18.27 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16569866 120 - 20766785 AGAUACGGAACCAUAGCCGGAAUGUCGUACGAUAUUUCGGCGGAGAAUUGUGCGGAGCCCACGGCAGCACUGAGUAUGAAACCAAAGGGUUCCAAGCUGAGAAGGCGUUAAGGGUCAGAA .((..(((((((...(((((((((((....)))))))))))........((((...(((...))).)))).................))))))..(((.....))).....)..)).... ( -41.20) >DroVir_CAF1 5270 96 - 1 AAGUACUCAACUAUAGCUGGUAUAUCAUAGGAAAUCUCCGCGGAAAACUGAGCUGAGCCCACGGCAGCACUGAGAGUGUAGCCAAAGGGAUCGAAG------------------------ ......((......(((((((...((...(((....)))...))..))).))))((.(((..(((.((((.....)))).)))...))).))))..------------------------ ( -25.00) >DroSec_CAF1 4393 120 - 1 AGAUACGGAACAACAGCCGGAAUGUCGUACGAUAUUUCGGCGGAGAAUUGUGCAGAGCCCACGGCAGCGCUGAGUAGGAAACCAAAGGGUUCCAAGCUGAGAAGGCGUUAAGGGUCAGAA .((..(..(((....(((((((((((....))))))))))).............((((((.((((...))))....(....)....))))))...(((.....))))))..)..)).... ( -38.50) >DroEre_CAF1 4213 120 - 1 AGAUACGGGACAAUAGCCGGAAUGUCGUACGAUAUUUCAGCGGAGAAUUGUGCGGAGCCCACAGCAGCACUGAGCAGAAAACCAAAGGGUUCCAAGCUGAGAAGGGUUGCAGGGUUAGAA .....(.(.(((((.((.((((((((....)))))))).)).....))))).).)(((((...(((((.((.(((....((((....))))....))).))....))))).))))).... ( -36.90) >DroYak_CAF1 4259 120 - 1 AGAUACGGGACAAUAGCCGGAAUGUCGUACGAUAUUUCAGCGGAGAAUUGUGCGGAACCCACAGCAGCACUGAGCAGGAAACCAAAUGGUUCCAAGCUGAGAAGGGUUUAAGGGUCAGAG .((..(.(.(((((.((.((((((((....)))))))).)).....))))).).((((((.((((.((.....)).((((.((....))))))..))))....))))))..)..)).... ( -37.30) >DroAna_CAF1 4249 116 - 1 AGAUAGGGAACUAUUGCUGGAAUAUCGUAGGAUAUUUCUGCGGAGAAUUGGGCAGAACCUACAGCGGCAGUCAGUAUAAAGCCAAAGGGUUGCAGACUAAAAAGGAGUUU----UCAUGA .....(..((((((((((((.....)(((((....((((((..........)))))))))))..))))))).(((....((((....))))....))).......)))).----.).... ( -30.80) >consensus AGAUACGGAACAAUAGCCGGAAUGUCGUACGAUAUUUCAGCGGAGAAUUGUGCGGAGCCCACAGCAGCACUGAGUAGGAAACCAAAGGGUUCCAAGCUGAGAAGGCGUUAAGGGUCAGAA ......(((((....((.((((((((....)))))))).))........((((...((.....)).))))..................)))))........................... (-17.29 = -18.27 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:23 2006