| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,765,694 – 2,765,793 |
| Length | 99 |
| Max. P | 0.831155 |
| Location | 2,765,694 – 2,765,793 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 78.49 |
| Mean single sequence MFE | -20.14 |
| Consensus MFE | -11.64 |
| Energy contribution | -11.23 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2765694 99 + 20766785 ACUUUCCGUUGCGCCACACCCCCCACACAACCAACAACCCCC--GCCCCGAAAUGGGUUAACUAUUUACACAAACAUGUUGGCGCGAAAUUAGCGCCUCAA ........((((((((..........................--((((......))))...........(((....))))))))))).............. ( -16.70) >DroSec_CAF1 7042 97 + 1 ACUUUCCGGCGUGCCACACCC-CCACACAAACAACAGCC-CC--GCCCCGAAAUGGGUUAACUAUUUACACAAACAUGUUGGCGCGAAAUUAGCGCCUCAA .......((((.((.......-..............)).-.)--)))...((((((.....)))))).........((..(((((.......))))).)). ( -18.80) >DroSim_CAF1 15030 99 + 1 ACUUUCCGGCGAGCCACACCCCCCACACAAACAACAGCCCCC--GCCCCGAAAUGGGUUAACUAUUUACACAAACAUGUUGGCGCGAAAUUAGCGCCUCAA .......((((.((......................))...)--)))...((((((.....)))))).........((..(((((.......))))).)). ( -18.25) >DroEre_CAF1 4402 93 + 1 ACUUUCCGAUGCGCCACACCCCCA--ACAGCCAACGGCCCA------UCAAAAUGGGUUAAGUAUUUACACAAACAAGUUGGCGCGAAAUUAGCGCCACAA ..........((((..........--...((((((((((((------(....)))))))..((....))........)))))).........))))..... ( -21.85) >DroYak_CAF1 4228 99 + 1 ACUUUCCGAUGCGCCACACCCCCA--UCAGCCAUCAUCCCCCUUAACCCAAAAUGGGUUAAGUAUUUACACAAACAAGUUGGCGCGAAAUUAGCGCCACAA ((((...((((.((..........--...))))))......((((((((.....)))))))).............))))((((((.......))))))... ( -27.02) >DroAna_CAF1 4310 87 + 1 ACUUGCU-----ACCAUAUCCCCCGCCCGGACUCUAUC--CC--GCCCC-----GGAUUAAAUAUUUGCACAAACAAGUCGGUGCGAAAUUAGCGCCACUU ...(((.-----..........(((..(((........--))--)...)-----))...........))).....((((.(((((.......))))))))) ( -18.25) >consensus ACUUUCCGAUGCGCCACACCCCCCACACAAACAACAGCCCCC__GCCCCGAAAUGGGUUAACUAUUUACACAAACAAGUUGGCGCGAAAUUAGCGCCACAA .................((((.................................))))......................(((((.......))))).... (-11.64 = -11.23 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:31 2006