Locus 5076

Sequence ID 2R_DroMel_CAF1
Location 16,482,059 – 16,482,151
Length 92
Max. P 0.607827
window8115

overview

Window 5

Location 16,482,059 – 16,482,151
Length 92
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.52
Mean single sequence MFE -22.06
Consensus MFE -14.68
Energy contribution -14.23
Covariance contribution -0.44
Combinations/Pair 1.32
Mean z-score -1.34
Structure conservation index 0.67
SVM decision value 0.15
SVM RNA-class probability 0.607827
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16482059 92 + 20766785
AAUUUGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAU------AAGAGAAACCAAAGGUUACUGCCAUU--UGCCACUGAGCAAACUGA-----------------AAUAAA
..(((((((...(((((((.((.....((((.((...(((..------.......)))....)))))).)).))--)))))..)))))))....-----------------...... ( -22.10)
>DroSec_CAF1 157128 92 + 1
AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAU------AAGGGAAACCAAAGGUUACUGCCAUU--UGCCGCAGAGCAAACUUA-----------------AAUAAA
....(((....(((((((....((((..((((......))))------..((....))...)))).))))))).--.)))..............-----------------...... ( -22.70)
>DroSim_CAF1 154632 92 + 1
AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAU------AAGGGAAACCAAAGGUUACUGCCAUU--UGCCGCAGAGCAAACUUA-----------------AAUAAA
....(((....(((((((....((((..((((......))))------..((....))...)))).))))))).--.)))..............-----------------...... ( -22.70)
>DroEre_CAF1 158877 94 + 1
AAUUGGUUUUCGUGGCAGACGGAACUAAGUACGCAUGGGUAU------CUGU-GAGUUAAAGGUUACUGCCAUU--UGCCGCAGAGCAAACUGAAA--------------AAAUGAA
..(..(((((((((((((((((((((....((.(((((....------))))-).))....)))).)))...))--)))))).))..))))..)..--------------....... ( -23.70)
>DroYak_CAF1 159590 99 + 1
AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAUACUCGUAUGU-UAGCCAAAGGUUACUGCCAUUUUUGCCGCAGAGCAAACUGA-----------------AAUGAA
....(((....(((((((............(((.(((((....))))).)))-(((((...))))))))))))....))).(((......))).-----------------...... ( -23.40)
>DroAna_CAF1 155544 100 + 1
AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUAUU---------------UGCCAAAGGUUACUGCCAUU--UGCCGCGAAGUGAACACAAAAUAAACCCACAAUAAAAUAAA
....(((....(((((((....((((......(((....---------------)))....)))).))))))).--.))).....(((...............)))........... ( -17.76)
>consensus
AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAU______AAGG_AAACCAAAGGUUACUGCCAUU__UGCCGCAGAGCAAACUGA_________________AAUAAA
...((((....(((((((......(((.(....).)))................((((...)))).)))))))....)))).................................... (-14.68 = -14.23 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:54 2006