| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,761,625 – 2,761,732 |
| Length | 107 |
| Max. P | 0.761749 |
| Location | 2,761,625 – 2,761,732 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.60 |
| Mean single sequence MFE | -41.25 |
| Consensus MFE | -30.78 |
| Energy contribution | -31.98 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2761625 107 - 20766785 CACGCGCCUACACAGCCGGCAGCUGGACAAUGGGCUGCUGGGGGGCGUCCCAGUGGGCCUCGCAGUAGUCGACUAGCUGGUUCUCGGCCUUGGUCAGCUGC---------UCCUCG---- ...((((((((....(((((((((........)))))))))(((....))).))))))...))((((((.(((((((((.....))))..))))).)))))---------).....---- ( -47.40) >DroVir_CAF1 357 110 - 1 ACAGGACUUAUACCGCCGGCAGCUGGACAAUCGGAUGCUGCGGUGCAUCCCAAUGGGCUUCGCAGUAGUCGACCAGUUGAUUCUCGGCCUUGUUCAGCUGC---------UCCUCGCUC- ...((.......))((.((((((((((((((((..((((((((.((..((....)))).))))))))..)))...((((.....)))).))))))))))))---------)....))..- ( -42.30) >DroGri_CAF1 405 107 - 1 ---UCGCCUACACCGCUGGCAACUGGACAAUGGGCUGCUGCGUGGCAUCCCAGUGGACCUCGCAGUAGUCGACCAGUUGAUUCUCGGCCUUAUUCAGCUGC---------UCCUCGCUC- ---...........((((((((((((....(.((((((((((.((..(((....))))).)))))))))).))))))))....))))).......(((...---------.....))).- ( -37.00) >DroWil_CAF1 363 109 - 1 CACA-UUCUACACAGCCGGCAGCUGAACAAUGGGAUGUUGUGGUGCAUCCCAAUGGGCUUCACAAUAGUCGACCAAUUGAUUUUCGGCCUUAUUGAGCUGC---------UCCUCAUUC- ....-............(((((((.((((.((((((((......)))))))).))((((.......((((((....))))))...))))...)).))))))---------)........- ( -32.90) >DroMoj_CAF1 363 110 - 1 AACGCGCCUACACCGCGGGCAGCUGGACAAUGGGAUGCUGGGGCGCAUCCCAAUGUGCCUCGCAGUAGUCGACCAGUUGAUUUUCGGCCUUGUUCAGCUGC---------UCCUCGUUC- ((((((.......)))((((((((((((((.((..(((.(((((((((....))))))))))))(.((((((....))))))..)..))))))))))))))---------))...))).- ( -48.70) >DroAna_CAF1 398 112 - 1 --------UACACAGCCGGCAGCUGGACAAUGGGAUGCUGGGGUGCAUCCCAGUGGGCCUCGCAGUAGUCGACCAGUUGAUUCUCGGCCUUGGUCAGCUUGUCCUCCUCCUCCUCGUCCU --------.........((.((..((((((((((((((......))))))))((.((((..((...((((((....))))))....))...)))).))))))))..)))).......... ( -39.20) >consensus _ACGCGCCUACACAGCCGGCAGCUGGACAAUGGGAUGCUGGGGUGCAUCCCAAUGGGCCUCGCAGUAGUCGACCAGUUGAUUCUCGGCCUUGUUCAGCUGC_________UCCUCGUUC_ ..................(((((((((((.((((((((......))))))))..(((((....((.((((((....)))))))).))))))))))))))))................... (-30.78 = -31.98 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:30 2006