Locus 505

Sequence ID 2R_DroMel_CAF1
Location 2,758,928 – 2,759,030
Length 102
Max. P 0.722127
window960

overview

Window 0

Location 2,758,928 – 2,759,030
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.76
Mean single sequence MFE -33.67
Consensus MFE -21.52
Energy contribution -21.58
Covariance contribution 0.06
Combinations/Pair 1.26
Mean z-score -1.90
Structure conservation index 0.64
SVM decision value 0.40
SVM RNA-class probability 0.722127
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2758928 102 + 20766785
UGACGUGCGGAU-------CAAGCUGGAUGAAGAACCAAAACUUCUAAUCCGCACGUUCGCCGCAGCA------AUAGA----AAAUGCUGUAGUGGUGCCCUUU-AUGCACUUGUGACA
.(((((((((((-------.(((.(((........)))...)))...)))))))))))(((..(((((------.....----...)))))..)))((((.....-..))))........ ( -34.40)
>DroSim_CAF1 9205 102 + 1
UGACGUGCGGAU-------CAAGCUGGAUGGAGAAGCAAAACUUCUAAUCCGCACGUUCGCCGCAGCA------AUAGA----AAAUGCUGUAGUGGUGCCCUUU-UUGCACUUGUGACA
.(((((((((((-------....((....))(((((.....))))).)))))))))))(((..(((((------.....----...)))))..)))((((.....-..))))........ ( -35.40)
>DroEre_CAF1 9685 109 + 1
UGACGUGCGGAUUGCGGACCAGGCUGGAUGGAGAAGCAAAACUUCUAAUUCGCACGUUCGCCGCAGCA------AUAGAA-AAAAAUGCUGUAG---UGCCCUUU-AUUCACUUGUGACG
.((((((((((((.....(((.......)))(((((.....)))))))))))))))))(((..(((((------......-.....)))))..)---))......-..(((....))).. ( -32.50)
>DroYak_CAF1 9047 110 + 1
UGACGUGCGGAU-------CAAGCUGCAUUGAGAACCUAAACUCCUAAUUCGCACGUUCGUCGCAGUGAAACGAGUAGAAGGAAAAUGCUGUAG---AGCCCUUUCAUUCACUUGUGACG
.(((((((((((-------(((......))))((........))....))))))))))((((((((((((.(........)((((..(((....---)))..)))).))))).))))))) ( -32.40)
>consensus
UGACGUGCGGAU_______CAAGCUGGAUGGAGAACCAAAACUUCUAAUCCGCACGUUCGCCGCAGCA______AUAGA____AAAUGCUGUAG___UGCCCUUU_AUGCACUUGUGACA
.(((((((((((.................((((........))))..)))))))))))(((..(((((..................)))))..)))........................ (-21.52 = -21.58 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:26 2006