Locus 504

Sequence ID 2R_DroMel_CAF1
Location 2,755,473 – 2,755,593
Length 120
Max. P 0.844052
window959

overview

Window 9

Location 2,755,473 – 2,755,593
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.94
Mean single sequence MFE -53.70
Consensus MFE -33.53
Energy contribution -35.78
Covariance contribution 2.26
Combinations/Pair 1.35
Mean z-score -1.76
Structure conservation index 0.62
SVM decision value 0.76
SVM RNA-class probability 0.844052
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2755473 120 - 20766785
GGCCGGAGAUGCUUUUGUGGCCGGAUUCUUGCACGCCUGGCUGGAGAAGCGCUCGCUGGGCGAGUGCAUCCGAAUGGCCUCCAGCGUAGCCGCCAAGGUCGUCACCCAGGUGGGCUGCAA
(((((.(((....))).))))).......((((.(((((.((((.((.((((((((...)))))))).)).((.((((((...(((....)))..))))))))..)))).))))))))). ( -56.30)
>DroVir_CAF1 45011 120 - 1
CGCCGGCGACGCCUUUGUCGCCGGCUUUCUGCACGCCUGGCUGGAGAAGCGUUCGCUCAGCGAAUGCGUGCGCCUGGCCAGCCAAGUGGCCGCCAAGGUGGUCACCCAGGUGGGCUGCAA
.((((((((((....))))))))))....((((.(((((.((((....((((((((...))))))))(((((((((((..(((....))).))).)))))..))))))).))))))))). ( -69.50)
>DroGri_CAF1 6054 120 - 1
CGCCGGUGAUGCAUUUGUUGCUGGCUUCCUCCAUGACUGGCUAAAGAAGCGUUCGUUGAGCGAGUGCGUGCGUAACGGCUGCAACGUGGCCGCCAAGGUGGUCACACAGGUUGGCUGCAA
.(((((..((......))..))))).....(((...(((.........(((..(((((.(((....)))...)))))..)))...((((((((....)))))))).)))..)))...... ( -45.00)
>DroWil_CAF1 7002 120 - 1
UGCUGGUGAUUCAUUUGUGGCUGGUUUCCUACAUGCCUGGCUGGAGAGGCGUUCCCUGAGCGAAAGCAUACGCAUUGCCACAAAUGUGGCCGCCAAAGUGGUCACACAAGUUGGUUGCAA
(((.(((.(..((((((((((..((.......((((((........)))))).......((....))....))...))))))))))).)))(((((.(((....)))...))))).))). ( -41.40)
>DroMoj_CAF1 18799 120 - 1
AGCUGGCGAUGCAUUUGCUGCGGGCUUCCUGCACGCCUGGCUGGAGAAACGUUCGCUGACCGAGUGCGUCCGUUUGGCCAGCAAUAUCGCCUCCAAGGUGGUGACUCAGGUGGGCUGUAA
(((((((((.....)))))(((((...))))).(((((((((((..(((((..(((.........)))..)))))..)))))..(((((((.....)))))))...)))))))))).... ( -52.50)
>DroAna_CAF1 13825 120 - 1
AGCAGGCGAUGCCUUUGUGGCCGGGUUCCUGCACGCCUGGCUGGAGAAACGCUCGCUGGGCGAGUGCGUCCGCAUGGCCUCGGACGUGGCUGCAAAGGUCGUUACCCAGGUGGGCUGUAA
.((((..((((((((((..((((.((((..((.((((..((..(((.....)))))..)))).((((....)))).))...)))).))))..)))))).)))).(((....))))))).. ( -57.50)
>consensus
AGCCGGCGAUGCAUUUGUGGCCGGCUUCCUGCACGCCUGGCUGGAGAAGCGUUCGCUGAGCGAGUGCGUCCGCAUGGCCACCAACGUGGCCGCCAAGGUGGUCACCCAGGUGGGCUGCAA
.((((((.((......)).))))))....((((.(((((.((((....((((((((...))))))))..................((((((((....)))))))))))).))))))))). (-33.53 = -35.78 +   2.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:25 2006