Locus 5007

Sequence ID 2R_DroMel_CAF1
Location 16,305,566 – 16,305,661
Length 95
Max. P 0.948856
window8015

overview

Window 5

Location 16,305,566 – 16,305,661
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 97.61
Mean single sequence MFE -21.12
Consensus MFE -19.99
Energy contribution -20.05
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -1.29
Structure conservation index 0.95
SVM decision value 1.39
SVM RNA-class probability 0.948856
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16305566 95 + 20766785
GAAAAUUAAUAUUGAGUAACUACGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUCUGCCAAUGAGAUUGUAAUUAGCG
.........((((((((.....((.((.......)))).)))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -19.10)
>DroSec_CAF1 9009 95 + 1
GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUCUGCCAAUGAGAUUGUAAUUAGCG
.........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -21.60)
>DroSim_CAF1 9403 95 + 1
GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUCUGCCAAUGAGAUUGUAAUUAGCG
.........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -21.60)
>DroEre_CAF1 8011 95 + 1
GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUUUGCCAAUGAGAUUGUAAUUAGCG
.........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -21.60)
>DroYak_CAF1 8722 95 + 1
GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUUUGCCAAUGAGAUUGUAAUUAGCG
.........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -21.60)
>DroAna_CAF1 9314 95 + 1
GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACGCGAACUCGAUAAACAGGCUAAUUAGUUUCUGCUCUUUGGCAAUGAGAUUGUAAUUAGUG
.........((((((((....(((.(((...)))..))))))))))).....(((((((((((((((((....))))..)))))..)))))))). ( -21.20)
>consensus
GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUCUGCCAAUGAGAUUGUAAUUAGCG
.........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). (-19.99 = -20.05 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:19 2006