Locus 5000

Sequence ID 2R_DroMel_CAF1
Location 16,281,101 – 16,281,206
Length 105
Max. P 0.671027
window8005

overview

Window 5

Location 16,281,101 – 16,281,206
Length 105
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 76.45
Mean single sequence MFE -25.71
Consensus MFE -13.19
Energy contribution -14.31
Covariance contribution 1.11
Combinations/Pair 1.05
Mean z-score -2.38
Structure conservation index 0.51
SVM decision value 0.29
SVM RNA-class probability 0.671027
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16281101 105 + 20766785
CAGCUGUGGCAGCAAAUUGAUAAAAACACAGGCAGUGGCAGCGGCAGUGGCAGUUGCAACGGCAGCUACA------GCUGCAACCAUAACGACAACGGCGACCAAACAAUA
((((((((((.((.............(((.....)))(((((.((....)).)))))....)).))))))------))))............................... ( -31.40)
>DroSec_CAF1 56256 87 + 1
CAGCUGUGGCAGCAAAUUGAUAAAAACCCAGGC------------------AGUUGCAACGGCAACUGCA------GCUGCAACCAUAACGACAACGGCGACCAAACAAUA
..(((((.(((((...(((.........)))((------------------((((((....)))))))).------))))).............)))))............ ( -27.04)
>DroYak_CAF1 70145 93 + 1
CAGCUGUGGCAGCAAAUUGAUAAAAACACAGG------------------CAGUGGCAGUUGCAACUUCUGCAGCAACAUCAACCAUAACGACAACGGCGACCAAACAAUA
......(((..((...(((((.....(((...------------------..)))...((((((.....))))))...)))))......((....))))..)))....... ( -18.70)
>consensus
CAGCUGUGGCAGCAAAUUGAUAAAAACACAGGC_________________CAGUUGCAACGGCAACUACA______GCUGCAACCAUAACGACAACGGCGACCAAACAAUA
..(((((.(((((...(((.........)))....................((((((....)))))).........))))).............)))))............ (-13.19 = -14.31 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:09 2006