| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,276,483 – 16,276,576 |
| Length | 93 |
| Max. P | 0.646280 |
| Location | 16,276,483 – 16,276,576 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 73.44 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -5.95 |
| Energy contribution | -6.37 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16276483 93 - 20766785 A---GCCCAUCUCCAUUUGUGG-CAUUGCGUGGCCCCAAUUG-GGCA--AG--AGAUAUUAUAAUUAAUAUCAGCUUAAAAGGUUUUUCCUG--------C---CCAAUUACG .---(((((........)).))-).............(((((-((((--.(--((((((((....)))))))((((.....))))..)).))--------)---))))))... ( -26.10) >DroSec_CAF1 51721 91 - 1 A---GC-CAUCUCCAUUUGUGGCCAUUGCGUGGCCCCAAUUG-GGCA--A---AGAUAUUAUAAUUAAUAUCAGCU-AAAAGGUUUUUCCUG--------C---CCAAUUACG .---..-...........(.((((((...)))))).)(((((-(((.--.---.(((((((....)))))))....-...(((.....))))--------)---))))))... ( -28.40) >DroSim_CAF1 52384 92 - 1 A---GC-CAUCUCCAUUUGUGGCCAUUGCGUGGCCCCAAUUG-GGCA--AG--AGAUAUUAUAAUUAAUAUCAGCU-AAAAGGUUUUUCCUG--------C---CCAAUUACG .---..-...........(.((((((...)))))).)(((((-((((--.(--((((((((....)))))))((((-....))))..)).))--------)---))))))... ( -28.80) >DroEre_CAF1 56841 85 - 1 A--------------UUUGUGG-UGUUGCGUGGCUCCAAUUGGGGCGCAAUAUAUGAAUUAUAAUUAAUAUCAGCU-AAAAGGUUUUUCCUG--------C---CCAAUUAC- .--------------.(((.((-((((((...(((((....))))))))))...(((((((....)))).)))...-...(((.....))))--------)---))))....- ( -18.30) >DroYak_CAF1 65391 98 - 1 AUCAGC-CAUCUCCAUUUGUGC-UAUUGCGUGGCUCCAGUUG-GGCACAACAUAUAUAUUAUAAUUAAUAUCAGCU-AAAAGGUUUUUCCAG--------C---CCAAUUACG ...(((-(((..........((-....))))))))..(((((-(((.........((((((....)))))).....-....((.....)).)--------)---))))))... ( -21.50) >DroAna_CAF1 30335 92 - 1 -------------GAUGUGUGG-G-AUGUAUGGCUUCAAUUA-GAUG--GA--AGAUAUCAUAAUUAACAUCUACU-AAAAGCUUUCCCCACGAAGCACACCCAUCAAUUAUG -------------..((((.((-(-(.....(((((....((-((((--..--.(((......)))..))))))..-..))))).)))))))).................... ( -20.20) >consensus A___GC_CAUCUCCAUUUGUGG_CAUUGCGUGGCCCCAAUUG_GGCA__AG__AGAUAUUAUAAUUAAUAUCAGCU_AAAAGGUUUUUCCUG________C___CCAAUUACG ...................(((.....((...(((........)))........(((((((....))))))).))......((.....))..............)))...... ( -5.95 = -6.37 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:06 2006