| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,276,204 – 16,276,313 |
| Length | 109 |
| Max. P | 0.640626 |
| Location | 16,276,204 – 16,276,313 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 94.46 |
| Mean single sequence MFE | -22.14 |
| Consensus MFE | -20.50 |
| Energy contribution | -20.83 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16276204 109 - 20766785 UUGUAUUUACAGUUCAGUCAGUUGGCUAUAGGUACUAAAAAAUCAACCAUAAAUUGGACUUAAUUGAACUGUGGGUUACAUUUAUUUUUUAGAUAUCAAAUCAAAGAUU .((((((((((((((((((....)))).(((((.((((...............)))))))))...)))))))))).)))).....(((((.(((.....)))))))).. ( -20.76) >DroSec_CAF1 51467 107 - 1 UUGUAUUUACAGUUCAGUCAGUUGGCUAUUUGUACUAAAAAAUCAGCCAUAAAUUGGACUUAAUUGAACUGUGGGUUAAAUUUAUUUUUUUGAUA--AAAUCAAAGACC ....(((((((((((((((((((((((((((........)))).)))))...))))......))))))))))))))..........((((((((.--..)))))))).. ( -24.60) >DroSim_CAF1 52130 107 - 1 UUGUAUUUACAGUUCAGUCAGUUGGCUAUAGGUACUAAAAAAUCAACCAUAAAUUGGACUUAAUUGAACUGUGGGUUAAAUUUAUUUUUUUGAUA--AAAUCAAAGACC ....(((((((((((((((....)))).(((((.((((...............)))))))))...)))))))))))..........((((((((.--..)))))))).. ( -21.06) >consensus UUGUAUUUACAGUUCAGUCAGUUGGCUAUAGGUACUAAAAAAUCAACCAUAAAUUGGACUUAAUUGAACUGUGGGUUAAAUUUAUUUUUUUGAUA__AAAUCAAAGACC ....(((((((((((((((....))))...................(((.....)))........)))))))))))..........((((((((.....)))))))).. (-20.50 = -20.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:05 2006