| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,268,230 – 16,268,326 |
| Length | 96 |
| Max. P | 0.988797 |
| Location | 16,268,230 – 16,268,326 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.07 |
| Mean single sequence MFE | -46.37 |
| Consensus MFE | -33.81 |
| Energy contribution | -34.25 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.28 |
| Mean z-score | -3.62 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.988797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16268230 96 - 20766785 CCGCUUCCUCUUCCUCAUCAGCCGAUCGCUUGCCACUGCCGGAAUGUGAUGGCUUGUGUGUUGGCGGUGGUGGAGGUGG---UGGUGGGUAUGGGUAGG (((((.((.((((((((((.(((((((((..((((..((......))..))))..))).))))))))))).))))).))---.)))))........... ( -43.40) >DroSec_CAF1 43487 90 - 1 UCGCUUCCUCCUCCUCAUCUGCCGAUCGCUUGCCACCGCCGGAAUGUGGUGGCUUGUGUGUUGGCG------GAAGUGG---UGGUGGGUAUGGGUAGG (((..(((.((.((.(.((((((((((((..((((((((......))))))))..))).)))))))------)).).))---.)).)))..)))..... ( -45.30) >DroSim_CAF1 43955 90 - 1 CUGCUUCCUCCUCCUCAUCCGCCGAUCGCUGGCCACCGCCGGAAUGUGGUGGCUUGUGUGUUGGCG------GAGGUGG---UGGUGGGUAAGGGUAGG ((((((((.((.((.(.((((((((((((.(((((((((......))))))))).))).)))))))------)).).))---.)).)))....))))). ( -50.70) >DroYak_CAF1 56886 93 - 1 CCGCCUCCUCAUCAUCAUCCACCGAUCGCUUGUCUCCGCCGGAAUGCGAUGGCUUGUGUGUUGGCG------GAGGUGGUGGUGGUGGGUAGGGGUAGG ((.(((.((((((((((.((((((((.....)))((((((((.((((((....)))))).))))))------))))))))))))))))).))))).... ( -46.10) >consensus CCGCUUCCUCCUCCUCAUCCGCCGAUCGCUUGCCACCGCCGGAAUGUGAUGGCUUGUGUGUUGGCG______GAGGUGG___UGGUGGGUAUGGGUAGG (((((.((.((((......((((((((((..((((((((......))))))))..))).)))))))......)))).))....)))))........... (-33.81 = -34.25 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:04 2006